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The map label for this gene is ydcM [C]

Identifier: 113476810

GI number: 113476810

Start: 5043365

End: 5043718

Strand: Reverse

Name: ydcM [C]

Synonym: Tery_3287

Alternate gene names: 113476810

Gene position: 5043718-5043365 (Counterclockwise)

Preceding gene: 113476812

Following gene: 113476809

Centisome position: 65.08

GC content: 41.81

Gene sequence:

>354_bases
ATGGTTGAAAAAGCATACAAATTTAGATTTTACCCAACTCCTCAACAGGAAAGTCCGCTGAGGAGAACATTGGGTTGCGT
ACGTTTAGTCTACAACTTTGCCTTAGCCGTCAGGACTCAAGCCTGGTATAAACACCAGGAACGAGTAGGTTACAAACAAA
CCTCAGCTATGCTGACGAACTGGAAAAAACAGGAAGATTTAGATTTTCTGAGTCAAAGTAGTGTACCACTCCAGCAAGGC
TTAAAACATTTACAAACTGCTTTCACCAACTTTTTTAGCGGGCGGACTAAATATCCTAACTTCAAAAAAAAGCGCAACGG
TGGTAGTGCTGAGTTTACTAAGGCAGCCTTCTAG

Upstream 100 bases:

>100_bases
CCCGCGCTCTTCCATAGGGGAGCGTCGGGATGAATGCTAATAAATCTTGCAGTTTTACAAATAATCTGTTAAAGTATGAA
TGTTGAAAAGTAGGCAGTAA

Downstream 100 bases:

>100_bases
TGGAAAGATGGCCAAGTCTATTTAGCTAAGTGTTTAGAACCCTTATCTATTAGATCGATCAGGCAATTACCACCAGGTTG
TATGCCTAGTAAAATCACTG

Product: transposase, IS891/IS1136/IS1341

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MVEKAYKFRFYPTPQQESPLRRTLGCVRLVYNFALAVRTQAWYKHQERVGYKQTSAMLTNWKKQEDLDFLSQSSVPLQQG
LKHLQTAFTNFFSGRTKYPNFKKKRNGGSAEFTKAAF

Sequences:

>Translated_117_residues
MVEKAYKFRFYPTPQQESPLRRTLGCVRLVYNFALAVRTQAWYKHQERVGYKQTSAMLTNWKKQEDLDFLSQSSVPLQQG
LKHLQTAFTNFFSGRTKYPNFKKKRNGGSAEFTKAAF
>Mature_117_residues
MVEKAYKFRFYPTPQQESPLRRTLGCVRLVYNFALAVRTQAWYKHQERVGYKQTSAMLTNWKKQEDLDFLSQSSVPLQQG
LKHLQTAFTNFFSGRTKYPNFKKKRNGGSAEFTKAAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 13710; Mature: 13710

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEKAYKFRFYPTPQQESPLRRTLGCVRLVYNFALAVRTQAWYKHQERVGYKQTSAMLTN
CCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
WKKQEDLDFLSQSSVPLQQGLKHLQTAFTNFFSGRTKYPNFKKKRNGGSAEFTKAAF
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MVEKAYKFRFYPTPQQESPLRRTLGCVRLVYNFALAVRTQAWYKHQERVGYKQTSAMLTN
CCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
WKKQEDLDFLSQSSVPLQQGLKHLQTAFTNFFSGRTKYPNFKKKRNGGSAEFTKAAF
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]