| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113476801
Identifier: 113476801
GI number: 113476801
Start: 5028950
End: 5030623
Strand: Reverse
Name: 113476801
Synonym: Tery_3277
Alternate gene names: NA
Gene position: 5030623-5028950 (Counterclockwise)
Preceding gene: 113476805
Following gene: 113476800
Centisome position: 64.91
GC content: 27.6
Gene sequence:
>1674_bases ATGGCAACTATGGAATCATTTTCACTCATAGATACAATAGTTAAAGAATTAGAAAAAGATGTAGATTTAATGAGGATAAA GAAAGTAATTTATTGGGCTTGTGACAACGTATGGGAGGATAATGAAACCAAGTTAGAAAGAGTTAATATGAAGAAGTTAA TAGAAAAGTTATACAATCAAATAGAAAATATAGATTCATTAAATGCTCGATTGTGTGAGATAGTTTCTAAAGTTAATAAA AAAACAGAATATAGTTTGTTAGCACAAAAAATTATTAACAGTATAGGTAAATTATATCCTCAAGAAGAAGAGACGACTGT TATGGAATATATTCCTAACAGGAGTCTTACTGTTTTAGATGACCAAATCGTTTTAACAAATAAATTAGTAGTAGAAGAAT CATACCCAAGAGATCCTGGAGAATTATTTGATGTGCGAGAAAAAATTATGCAGGGTACTAATCCATTAAAGGCAAAAATT CTGATTTTTTCGGCTGTACAACATCAATTTGATTTTGGTAATAAGGATTGGTTATTGTTGAGAACAAAAAACTTAGATAG TTTACTTAGACAAATATTTAATTTATGCTTATCTATAACAGATTTAGAGTCTTCTTTATATGCTACTGCTAATAATTTTG AAGACCCAGATGAATATACCCAAGTAGCCGATATAGTTATTAAGGCTTTAAACCTTTGCTATTCAGATGAAATTATAGTT CCTCAAAGTCAAGCAGAAGCTGAAAAATTTGAAACATCAATATTAGATACAAAAAAAATTAATATGGAGGATAATAGTTA TTTTGATAAAGACGATATGACTCTGCTAAATCTAACAAATTTGCCAGCTATAAACTCTACAGATAAAATTAGCTTTACCC CAGAAGAATATTCTATAATTTACTCTGAAAAAACTAATGCCTACAAAGATAAAATTATTGATGAAACCACAAATAAAGCA GAGGAAAAAACTCTTGAAAACTCTTTAATTTATAATCAAAAAATAGTTCCTATTTCCCAAGAACAAAAACCTGCTATAGG AGGAAACAATATCTTAGATTCTATCAAACAAAAACTCAGGATAGAAGATAAAATATCTACTATTGTCAATAAAAAAGTAG ATGTTGTAATGGATGCTATAGAAGCGGAATTTATTTCCTTAGAAAAAACTTTAAATCATTTTTTACAAGGTGAAACAGAA AAAAAACGTTTATTATTAAAATATACAGCCTTAGGGAATTTGATTAGTAATATACAGGAAAAATATACAAAATATCAAGA AATTCTCAAGGAATTGGAAAAAGAAGAAAGGAAAAAACTTAATCTCAATAATTCAGCTAATACTATTAGTCAAAAATCAT ATAAACAAACAAAAATTTATGATGAAAATCAACAAAAAATTATTGAATTAGCAACTCAAGGAAATCCTAAGGCAATGGCT ATGATAATTAATCAATTACTTGAGCAAAAAGGTATCACAGCCATAGCTGGTAGGAAAAATGATTATATACATATTGTTTT AGAATCAGAACAGGTTCCTAATCCAGAAATTGTCACTCCACTAGTAGAGCAAAAAATTGCTAGTTTACAATCAAAATATC TCAAAAATGTCAAAATTCATGGGAGACAATTAGGAAATAAATCAGTTATATGGACAAAAACAATTTCATTGTAA
Upstream 100 bases:
>100_bases TTTTTGGATAAAACTGATAATTATCAGCAAATTTATTGAAGATTTCAAGAATTATAAAAATTAGTAAAATATTTGAACGA TTCTTCAGGAATAAAAAATT
Downstream 100 bases:
>100_bases ATTTTTCTGTTTTAGGAAATAGGTATGGATTAAGATAACTCGAGAAGGTTAATCCTGCAAAAATTGTATTTCCTTTATAT TAACTTGTTATACCAATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MATMESFSLIDTIVKELEKDVDLMRIKKVIYWACDNVWEDNETKLERVNMKKLIEKLYNQIENIDSLNARLCEIVSKVNK KTEYSLLAQKIINSIGKLYPQEEETTVMEYIPNRSLTVLDDQIVLTNKLVVEESYPRDPGELFDVREKIMQGTNPLKAKI LIFSAVQHQFDFGNKDWLLLRTKNLDSLLRQIFNLCLSITDLESSLYATANNFEDPDEYTQVADIVIKALNLCYSDEIIV PQSQAEAEKFETSILDTKKINMEDNSYFDKDDMTLLNLTNLPAINSTDKISFTPEEYSIIYSEKTNAYKDKIIDETTNKA EEKTLENSLIYNQKIVPISQEQKPAIGGNNILDSIKQKLRIEDKISTIVNKKVDVVMDAIEAEFISLEKTLNHFLQGETE KKRLLLKYTALGNLISNIQEKYTKYQEILKELEKEERKKLNLNNSANTISQKSYKQTKIYDENQQKIIELATQGNPKAMA MIINQLLEQKGITAIAGRKNDYIHIVLESEQVPNPEIVTPLVEQKIASLQSKYLKNVKIHGRQLGNKSVIWTKTISL
Sequences:
>Translated_557_residues MATMESFSLIDTIVKELEKDVDLMRIKKVIYWACDNVWEDNETKLERVNMKKLIEKLYNQIENIDSLNARLCEIVSKVNK KTEYSLLAQKIINSIGKLYPQEEETTVMEYIPNRSLTVLDDQIVLTNKLVVEESYPRDPGELFDVREKIMQGTNPLKAKI LIFSAVQHQFDFGNKDWLLLRTKNLDSLLRQIFNLCLSITDLESSLYATANNFEDPDEYTQVADIVIKALNLCYSDEIIV PQSQAEAEKFETSILDTKKINMEDNSYFDKDDMTLLNLTNLPAINSTDKISFTPEEYSIIYSEKTNAYKDKIIDETTNKA EEKTLENSLIYNQKIVPISQEQKPAIGGNNILDSIKQKLRIEDKISTIVNKKVDVVMDAIEAEFISLEKTLNHFLQGETE KKRLLLKYTALGNLISNIQEKYTKYQEILKELEKEERKKLNLNNSANTISQKSYKQTKIYDENQQKIIELATQGNPKAMA MIINQLLEQKGITAIAGRKNDYIHIVLESEQVPNPEIVTPLVEQKIASLQSKYLKNVKIHGRQLGNKSVIWTKTISL >Mature_556_residues ATMESFSLIDTIVKELEKDVDLMRIKKVIYWACDNVWEDNETKLERVNMKKLIEKLYNQIENIDSLNARLCEIVSKVNKK TEYSLLAQKIINSIGKLYPQEEETTVMEYIPNRSLTVLDDQIVLTNKLVVEESYPRDPGELFDVREKIMQGTNPLKAKIL IFSAVQHQFDFGNKDWLLLRTKNLDSLLRQIFNLCLSITDLESSLYATANNFEDPDEYTQVADIVIKALNLCYSDEIIVP QSQAEAEKFETSILDTKKINMEDNSYFDKDDMTLLNLTNLPAINSTDKISFTPEEYSIIYSEKTNAYKDKIIDETTNKAE EKTLENSLIYNQKIVPISQEQKPAIGGNNILDSIKQKLRIEDKISTIVNKKVDVVMDAIEAEFISLEKTLNHFLQGETEK KRLLLKYTALGNLISNIQEKYTKYQEILKELEKEERKKLNLNNSANTISQKSYKQTKIYDENQQKIIELATQGNPKAMAM IINQLLEQKGITAIAGRKNDYIHIVLESEQVPNPEIVTPLVEQKIASLQSKYLKNVKIHGRQLGNKSVIWTKTISL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64104; Mature: 63973
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATMESFSLIDTIVKELEKDVDLMRIKKVIYWACDNVWEDNETKLERVNMKKLIEKLYNQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH IENIDSLNARLCEIVSKVNKKTEYSLLAQKIINSIGKLYPQEEETTVMEYIPNRSLTVLD HHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEC DQIVLTNKLVVEESYPRDPGELFDVREKIMQGTNPLKAKILIFSAVQHQFDFGNKDWLLL CCEEEECEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE RTKNLDSLLRQIFNLCLSITDLESSLYATANNFEDPDEYTQVADIVIKALNLCYSDEIIV EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEC PQSQAEAEKFETSILDTKKINMEDNSYFDKDDMTLLNLTNLPAINSTDKISFTPEEYSII CCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCEEEE YSEKTNAYKDKIIDETTNKAEEKTLENSLIYNQKIVPISQEQKPAIGGNNILDSIKQKLR EECCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHH IEDKISTIVNKKVDVVMDAIEAEFISLEKTLNHFLQGETEKKRLLLKYTALGNLISNIQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH KYTKYQEILKELEKEERKKLNLNNSANTISQKSYKQTKIYDENQQKIIELATQGNPKAMA HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHH MIINQLLEQKGITAIAGRKNDYIHIVLESEQVPNPEIVTPLVEQKIASLQSKYLKNVKIH HHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GRQLGNKSVIWTKTISL HHCCCCCCEEEEEECCC >Mature Secondary Structure ATMESFSLIDTIVKELEKDVDLMRIKKVIYWACDNVWEDNETKLERVNMKKLIEKLYNQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH IENIDSLNARLCEIVSKVNKKTEYSLLAQKIINSIGKLYPQEEETTVMEYIPNRSLTVLD HHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEC DQIVLTNKLVVEESYPRDPGELFDVREKIMQGTNPLKAKILIFSAVQHQFDFGNKDWLLL CCEEEECEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE RTKNLDSLLRQIFNLCLSITDLESSLYATANNFEDPDEYTQVADIVIKALNLCYSDEIIV EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEC PQSQAEAEKFETSILDTKKINMEDNSYFDKDDMTLLNLTNLPAINSTDKISFTPEEYSII CCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCEEEE YSEKTNAYKDKIIDETTNKAEEKTLENSLIYNQKIVPISQEQKPAIGGNNILDSIKQKLR EECCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHH IEDKISTIVNKKVDVVMDAIEAEFISLEKTLNHFLQGETEKKRLLLKYTALGNLISNIQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH KYTKYQEILKELEKEERKKLNLNNSANTISQKSYKQTKIYDENQQKIIELATQGNPKAMA HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHH MIINQLLEQKGITAIAGRKNDYIHIVLESEQVPNPEIVTPLVEQKIASLQSKYLKNVKIH HHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GRQLGNKSVIWTKTISL HHCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA