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The map label for this gene is yibD [C]

Identifier: 113476765

GI number: 113476765

Start: 4955862

End: 4957973

Strand: Reverse

Name: yibD [C]

Synonym: Tery_3238

Alternate gene names: 113476765

Gene position: 4957973-4955862 (Counterclockwise)

Preceding gene: 113476766

Following gene: 113476764

Centisome position: 63.97

GC content: 35.37

Gene sequence:

>2112_bases
ATGAACTTAGAATTAAAAGATTGGGAACTATGGGTAAATGAAAAACTAGCCCAAAAACCAAAAAATACACCAAGCTTACA
GGGAAGTGTCAAGCCAGTTTTATTCATTCTCCATGATATTACTTCAGCGGGGGCACAGCTATTTTTAGTTAGGCTTTTAG
AATGGATAGGTCAACATGAACCTACTATGTCTAAAGAAGTGCTGATCGATATTTCACGCTCGGATATTGGTAATTATGGA
GAGCAAGGAAACTTTGTTTTAGAGCGGGTAAAAAAATGTGGCGAAGTCCATTTTATTGATTCAAATAGTGGACTTCCTGA
AAATATTGCTGCTATTCGCTCTGGTTTTTACTCTTTAATTTATGTTAATACCTGTGTTTTAGGAGCGTTGCTAGATTCTA
TCAGAAAAATTCCTAGTCCTATTATTGTTCATGTTCACGAATTAAAATTTTGGATTAGTAATAGGCTAGGTATGGATAAC
TTTAATCGTTTATTGAAGTATGATCCTCGTTGGATTGCTTGTTCTAATGCCGTTCAAGAAAGTTTAGTTAATTACTGTCT
TGTTTCTCCTAAAAAAGTTGATGTTATTCATGGGTTTATTCCTTCTGAGAAACTACTTATTTCTCAAGTAAAAACTCCCC
AACAAATGAGGAAAGAGTTAAGTATTTCAGAAGATACTTTTGTTATTGCTTGTTGTGGAACTTTAGATTGGCGAAAAGGA
GGGGATTTAATAGTTCCTTTGCTAGTTATTTTGAAAAAAAAATTATCCCCAGAAAAAAAGTTTGTTTGTATCTGGGTTGG
TAACTGGGACAGCCAACTTTCTCAGCTAGAAATTGAATATACAGTCGAAAAGGCTGAGTTGGAAAACAATATTATTTTTA
CAGGGTATCAGAAATCTCCTCTGAATTATATGAGTTGTGCCGATGTTTTCTTACTTCTTTCTCGGGAAGATCCTTTTCCT
TTGGTAATGATGGAAGCAGGGGTTTGTAAACTTCCAGTGGTAGGGTTTGATGGTTCTGGTGGAGCAACTGAGTTTGTTGA
GTCAGAGGCAGGGTTACTTGCTCCTTACTTAAATTTGGAAGTAATGGCGGAAAAAATAGCTATACTTTACAATAATACCA
GTCTTAGGAAAGAAATGGGAGAAAATGCTTATCGAAAGGTTAATGAACTTTATAACGAAACTGTTTCTGCACCGAAAATA
TTACAATTAATTCAATCTTTAGTTCATAAGTCGAGTGAAACGACTGTAACTTTTAAGGATTTTGTACCTAGAGTTTCAGT
CATAGTTCCTAACTATAATCATGCTCCCTATCTCCGTAAACGTTTAGATTCAGTTTATAGTCAGACTTATACTGATTTTG
AAGTAATTTTACTAGATGACTGCTCTAGCGATAATAGTAGAGACATTTTGGCTTCTTATAAGGAAGAAAAACCTAATACT
ATTTTTGTTCCTAACGAATCTAATAGTGGCTCAGTTTTCCGTCAGTGGGAAAAAGGGGTATCTTTGGCTCGTGGTGAGTA
TATTTGGATTGCTGAATCTGATGATTTTGCCTCTCCTGATTTTCTGAAGCAGTTAGTAACTGTTATGGACGAGCATCCAG
AAGTTGGATTAGCATATTCCCAATCTTGGTTAGTTGATAGTCAAGATGTTGTTTCTGGAGATGCTAGTTGTTGGACTAAT
GATTTAGATAGTCAGCGCTGGTCTCAAAGTTTTATTAATGATGGGAGGGATGAGATAGTTAGATTTCTGATTTACAAAAA
TACGATTCCTAATGCTAGTGCGGTTTTAATTCGTAGAAGTGCATTGAAAAAATGTGGCGGTGTTATTGAGAAATCTTTTA
GATTGTGTGGAGATTGGCTACAATGGATGAAAATTTTGTCTTGCTCTGATGTTGGATTTGTGTCAGAATGTTTAAATTAT
TGGCGGCAAAATACCTCTAATGCTAGAGTTAAGAGCGCGGGTACTTTAGAATGGACCGAGGGAGAGCAAGTTTTGAGTTA
TATTTGTGGTTTGTTAAATTTGCCTGAAGAACAAAAAGACAAAATTCTTCTGTCTTTTATCCGCAGATGTTGGCAGTGGC
AAAGAGAATTTATTGAAAAGACTTATAATTAG

Upstream 100 bases:

>100_bases
ACATTTTTATCTGACTTCTTGAGTGAAGTTATAAATAAATTAGTTGCTCTAAAATTAATTATTGACAATCGTATAATTTT
CTGGGTGTGAGGTAATTTTA

Downstream 100 bases:

>100_bases
TTCTACTTTAAACCAATGAAAAAAATATTTCTTTACGGAGCCCCCCCAGTAGTTCCTCAAACTCCAGAGGATTCTACCAA
GTTTTTGATTGAGAGAAGTG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 703; Mature: 703

Protein sequence:

>703_residues
MNLELKDWELWVNEKLAQKPKNTPSLQGSVKPVLFILHDITSAGAQLFLVRLLEWIGQHEPTMSKEVLIDISRSDIGNYG
EQGNFVLERVKKCGEVHFIDSNSGLPENIAAIRSGFYSLIYVNTCVLGALLDSIRKIPSPIIVHVHELKFWISNRLGMDN
FNRLLKYDPRWIACSNAVQESLVNYCLVSPKKVDVIHGFIPSEKLLISQVKTPQQMRKELSISEDTFVIACCGTLDWRKG
GDLIVPLLVILKKKLSPEKKFVCIWVGNWDSQLSQLEIEYTVEKAELENNIIFTGYQKSPLNYMSCADVFLLLSREDPFP
LVMMEAGVCKLPVVGFDGSGGATEFVESEAGLLAPYLNLEVMAEKIAILYNNTSLRKEMGENAYRKVNELYNETVSAPKI
LQLIQSLVHKSSETTVTFKDFVPRVSVIVPNYNHAPYLRKRLDSVYSQTYTDFEVILLDDCSSDNSRDILASYKEEKPNT
IFVPNESNSGSVFRQWEKGVSLARGEYIWIAESDDFASPDFLKQLVTVMDEHPEVGLAYSQSWLVDSQDVVSGDASCWTN
DLDSQRWSQSFINDGRDEIVRFLIYKNTIPNASAVLIRRSALKKCGGVIEKSFRLCGDWLQWMKILSCSDVGFVSECLNY
WRQNTSNARVKSAGTLEWTEGEQVLSYICGLLNLPEEQKDKILLSFIRRCWQWQREFIEKTYN

Sequences:

>Translated_703_residues
MNLELKDWELWVNEKLAQKPKNTPSLQGSVKPVLFILHDITSAGAQLFLVRLLEWIGQHEPTMSKEVLIDISRSDIGNYG
EQGNFVLERVKKCGEVHFIDSNSGLPENIAAIRSGFYSLIYVNTCVLGALLDSIRKIPSPIIVHVHELKFWISNRLGMDN
FNRLLKYDPRWIACSNAVQESLVNYCLVSPKKVDVIHGFIPSEKLLISQVKTPQQMRKELSISEDTFVIACCGTLDWRKG
GDLIVPLLVILKKKLSPEKKFVCIWVGNWDSQLSQLEIEYTVEKAELENNIIFTGYQKSPLNYMSCADVFLLLSREDPFP
LVMMEAGVCKLPVVGFDGSGGATEFVESEAGLLAPYLNLEVMAEKIAILYNNTSLRKEMGENAYRKVNELYNETVSAPKI
LQLIQSLVHKSSETTVTFKDFVPRVSVIVPNYNHAPYLRKRLDSVYSQTYTDFEVILLDDCSSDNSRDILASYKEEKPNT
IFVPNESNSGSVFRQWEKGVSLARGEYIWIAESDDFASPDFLKQLVTVMDEHPEVGLAYSQSWLVDSQDVVSGDASCWTN
DLDSQRWSQSFINDGRDEIVRFLIYKNTIPNASAVLIRRSALKKCGGVIEKSFRLCGDWLQWMKILSCSDVGFVSECLNY
WRQNTSNARVKSAGTLEWTEGEQVLSYICGLLNLPEEQKDKILLSFIRRCWQWQREFIEKTYN
>Mature_703_residues
MNLELKDWELWVNEKLAQKPKNTPSLQGSVKPVLFILHDITSAGAQLFLVRLLEWIGQHEPTMSKEVLIDISRSDIGNYG
EQGNFVLERVKKCGEVHFIDSNSGLPENIAAIRSGFYSLIYVNTCVLGALLDSIRKIPSPIIVHVHELKFWISNRLGMDN
FNRLLKYDPRWIACSNAVQESLVNYCLVSPKKVDVIHGFIPSEKLLISQVKTPQQMRKELSISEDTFVIACCGTLDWRKG
GDLIVPLLVILKKKLSPEKKFVCIWVGNWDSQLSQLEIEYTVEKAELENNIIFTGYQKSPLNYMSCADVFLLLSREDPFP
LVMMEAGVCKLPVVGFDGSGGATEFVESEAGLLAPYLNLEVMAEKIAILYNNTSLRKEMGENAYRKVNELYNETVSAPKI
LQLIQSLVHKSSETTVTFKDFVPRVSVIVPNYNHAPYLRKRLDSVYSQTYTDFEVILLDDCSSDNSRDILASYKEEKPNT
IFVPNESNSGSVFRQWEKGVSLARGEYIWIAESDDFASPDFLKQLVTVMDEHPEVGLAYSQSWLVDSQDVVSGDASCWTN
DLDSQRWSQSFINDGRDEIVRFLIYKNTIPNASAVLIRRSALKKCGGVIEKSFRLCGDWLQWMKILSCSDVGFVSECLNY
WRQNTSNARVKSAGTLEWTEGEQVLSYICGLLNLPEEQKDKILLSFIRRCWQWQREFIEKTYN

Specific function: Unknown

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=108, Percent_Identity=32.4074074074074, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 80012; Mature: 80012

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLELKDWELWVNEKLAQKPKNTPSLQGSVKPVLFILHDITSAGAQLFLVRLLEWIGQHE
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PTMSKEVLIDISRSDIGNYGEQGNFVLERVKKCGEVHFIDSNSGLPENIAAIRSGFYSLI
CCCCCEEEEEECHHCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH
YVNTCVLGALLDSIRKIPSPIIVHVHELKFWISNRLGMDNFNRLLKYDPRWIACSNAVQE
HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHCCCCEEEHHHHHHH
SLVNYCLVSPKKVDVIHGFIPSEKLLISQVKTPQQMRKELSISEDTFVIACCGTLDWRKG
HHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCCCC
GDLIVPLLVILKKKLSPEKKFVCIWVGNWDSQLSQLEIEYTVEKAELENNIIFTGYQKSP
CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHEEEEEEEEHHHCCCCEEEECCCCCC
LNYMSCADVFLLLSREDPFPLVMMEAGVCKLPVVGFDGSGGATEFVESEAGLLAPYLNLE
CCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCCCCCHHHHHCCCCCEEHHHHHH
VMAEKIAILYNNTSLRKEMGENAYRKVNELYNETVSAPKILQLIQSLVHKSSETTVTFKD
HHHHHHHEEECCCHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEHHH
FVPRVSVIVPNYNHAPYLRKRLDSVYSQTYTDFEVILLDDCSSDNSRDILASYKEEKPNT
HCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCE
IFVPNESNSGSVFRQWEKGVSLARGEYIWIAESDDFASPDFLKQLVTVMDEHPEVGLAYS
EEECCCCCCCHHHHHHHHCCCEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEC
QSWLVDSQDVVSGDASCWTNDLDSQRWSQSFINDGRDEIVRFLIYKNTIPNASAVLIRRS
CCCCCCCHHHHCCCCHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
ALKKCGGVIEKSFRLCGDWLQWMKILSCSDVGFVSECLNYWRQNTSNARVKSAGTLEWTE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEECCCCCEEECC
GEQVLSYICGLLNLPEEQKDKILLSFIRRCWQWQREFIEKTYN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLELKDWELWVNEKLAQKPKNTPSLQGSVKPVLFILHDITSAGAQLFLVRLLEWIGQHE
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PTMSKEVLIDISRSDIGNYGEQGNFVLERVKKCGEVHFIDSNSGLPENIAAIRSGFYSLI
CCCCCEEEEEECHHCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH
YVNTCVLGALLDSIRKIPSPIIVHVHELKFWISNRLGMDNFNRLLKYDPRWIACSNAVQE
HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHCCCCEEEHHHHHHH
SLVNYCLVSPKKVDVIHGFIPSEKLLISQVKTPQQMRKELSISEDTFVIACCGTLDWRKG
HHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCCCC
GDLIVPLLVILKKKLSPEKKFVCIWVGNWDSQLSQLEIEYTVEKAELENNIIFTGYQKSP
CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHEEEEEEEEHHHCCCCEEEECCCCCC
LNYMSCADVFLLLSREDPFPLVMMEAGVCKLPVVGFDGSGGATEFVESEAGLLAPYLNLE
CCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCCCCCHHHHHCCCCCEEHHHHHH
VMAEKIAILYNNTSLRKEMGENAYRKVNELYNETVSAPKILQLIQSLVHKSSETTVTFKD
HHHHHHHEEECCCHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEHHH
FVPRVSVIVPNYNHAPYLRKRLDSVYSQTYTDFEVILLDDCSSDNSRDILASYKEEKPNT
HCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCE
IFVPNESNSGSVFRQWEKGVSLARGEYIWIAESDDFASPDFLKQLVTVMDEHPEVGLAYS
EEECCCCCCCHHHHHHHHCCCEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEC
QSWLVDSQDVVSGDASCWTNDLDSQRWSQSFINDGRDEIVRFLIYKNTIPNASAVLIRRS
CCCCCCCHHHHCCCCHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
ALKKCGGVIEKSFRLCGDWLQWMKILSCSDVGFVSECLNYWRQNTSNARVKSAGTLEWTE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEECCCCCEEECC
GEQVLSYICGLLNLPEEQKDKILLSFIRRCWQWQREFIEKTYN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840; 2111805 [H]