| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476682
Identifier: 113476682
GI number: 113476682
Start: 4795204
End: 4796496
Strand: Reverse
Name: 113476682
Synonym: Tery_3140
Alternate gene names: NA
Gene position: 4796496-4795204 (Counterclockwise)
Preceding gene: 113476683
Following gene: 113476679
Centisome position: 61.89
GC content: 28.62
Gene sequence:
>1293_bases ATGAGTGATTTTTCCCAAAAGAATTTAATATTTCTTATTTCACAACCCAGAGCAGGATCAACTCTTACTCAACGTATTTT GGGTAGTCATCAAGATATTCATACTATATCTGAACCTTGGATTATGTTACATCCTTTCTATGCACTGCGTGATAAGGGGT GTCAAATGGAGTATAGTGCAGTTAATAGTAAAAAAGGACTTAATAACTTTCTATGGTTACATCCTCAAGGGGAAGAAGCA TATTTTCAGTCAGTAAATAAAATGTGTCTTAATTTATATGAGGGAGTTATCAAGGAATCTGGCAAAAAATATTTCTTAGA TAAAACGCCAAGATACTATTATATTTTGCCTGAGTTGTACAGAACTTTTCCTTCTGCTAAATATATTTTTTTATTAAGAA ATCCCTTAGCTGTTTTATGTTCTATTTTTAATACTTTTATTCAAGAACATTGGTGGAGAATCCAATATTATCAAGGTGAT CTTTTAAAAGCACCTATTTTAATTGCTCAAGGAATGGTTGAATTACAAAACAAGAGTATTGTGCTCAGCTATGAACATTT ACTCGTTAATCCTAATCAGGAAATCAAAAAAGTTTGTAAATTTCTTAATATTCCTTTTGATGAGAAAATATTAAATTATG GTGAGAGTTCCTCACAGAAATGGGAATTTGGAGATCAATCTCAAATTTATCAAGAAAAAACTCCTAATTCTCAACATAGA GATCGTTGGAAAAAAGATTTAGATAACCCGATTATTTGGCAATGTGTATCTAATTATTTAGAGTTTTTAGGAAATGATCT TCTTAATAGTTTAGGTTATTCTTATGAAGAAGTTAAAAATATTCTTTCTGATTATAGTTATCAAACTAACATAGTTTTAC CTCCTGCTCTGAAGGATTTTTTTACTAGTGCAAATCTTTTTAAAAATAAAGCTTTACAACCTTATTTAGAAGCAGTGGAA TTAAACCCCCAAATATTCCACCCTTATCTAGATCTTGGCAAAGCATTATTAGAAAAAAAAGATTTTAAAAAAGCTCTTAA TTATCTACAAATAGCTTTAAAATTAGCTCCTTATATACCAGAAATTCATTTTTTAATAGGAGAAAATCTTTTAGGTTTAG GTGAATTAGATCAAGCTATTATTTATTATCAAAAAACTATTGATTTAGACTTTAGATTTGTCAAAAATTATGATAAGATA GAATCTACAATAATGGCTCTTAAAGAAGTCGCTCAAGTTAATCCAAATCATCAGGAGATCGCTAATTTAATCAAAACAAT AACAAATATTTGA
Upstream 100 bases:
>100_bases AAATGTTGCATGATCGATTATTAAAACTTGACCAGGTTGTAAATATTATAGCTCGCAGCACTATAATATAAAGTGATTGG TATATTTAAGTTTGAAAAAA
Downstream 100 bases:
>100_bases GAGCGAAAAAAAATCAAGGAAGATTGATTCTGTGTTACGTTTCTGGATGGTAAAGAAAAGATTATTAATCATTCCAAAGG GCTTTGTTGCATGAATGTTG
Product: sulfotransferase
Products: NA
Alternate protein names: Nodulation Protein NoeE; Beta-Ketoacyl Synthase; Polyketide Synthase
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MSDFSQKNLIFLISQPRAGSTLTQRILGSHQDIHTISEPWIMLHPFYALRDKGCQMEYSAVNSKKGLNNFLWLHPQGEEA YFQSVNKMCLNLYEGVIKESGKKYFLDKTPRYYYILPELYRTFPSAKYIFLLRNPLAVLCSIFNTFIQEHWWRIQYYQGD LLKAPILIAQGMVELQNKSIVLSYEHLLVNPNQEIKKVCKFLNIPFDEKILNYGESSSQKWEFGDQSQIYQEKTPNSQHR DRWKKDLDNPIIWQCVSNYLEFLGNDLLNSLGYSYEEVKNILSDYSYQTNIVLPPALKDFFTSANLFKNKALQPYLEAVE LNPQIFHPYLDLGKALLEKKDFKKALNYLQIALKLAPYIPEIHFLIGENLLGLGELDQAIIYYQKTIDLDFRFVKNYDKI ESTIMALKEVAQVNPNHQEIANLIKTITNI
Sequences:
>Translated_430_residues MSDFSQKNLIFLISQPRAGSTLTQRILGSHQDIHTISEPWIMLHPFYALRDKGCQMEYSAVNSKKGLNNFLWLHPQGEEA YFQSVNKMCLNLYEGVIKESGKKYFLDKTPRYYYILPELYRTFPSAKYIFLLRNPLAVLCSIFNTFIQEHWWRIQYYQGD LLKAPILIAQGMVELQNKSIVLSYEHLLVNPNQEIKKVCKFLNIPFDEKILNYGESSSQKWEFGDQSQIYQEKTPNSQHR DRWKKDLDNPIIWQCVSNYLEFLGNDLLNSLGYSYEEVKNILSDYSYQTNIVLPPALKDFFTSANLFKNKALQPYLEAVE LNPQIFHPYLDLGKALLEKKDFKKALNYLQIALKLAPYIPEIHFLIGENLLGLGELDQAIIYYQKTIDLDFRFVKNYDKI ESTIMALKEVAQVNPNHQEIANLIKTITNI >Mature_429_residues SDFSQKNLIFLISQPRAGSTLTQRILGSHQDIHTISEPWIMLHPFYALRDKGCQMEYSAVNSKKGLNNFLWLHPQGEEAY FQSVNKMCLNLYEGVIKESGKKYFLDKTPRYYYILPELYRTFPSAKYIFLLRNPLAVLCSIFNTFIQEHWWRIQYYQGDL LKAPILIAQGMVELQNKSIVLSYEHLLVNPNQEIKKVCKFLNIPFDEKILNYGESSSQKWEFGDQSQIYQEKTPNSQHRD RWKKDLDNPIIWQCVSNYLEFLGNDLLNSLGYSYEEVKNILSDYSYQTNIVLPPALKDFFTSANLFKNKALQPYLEAVEL NPQIFHPYLDLGKALLEKKDFKKALNYLQIALKLAPYIPEIHFLIGENLLGLGELDQAIIYYQKTIDLDFRFVKNYDKIE STIMALKEVAQVNPNHQEIANLIKTITNI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50264; Mature: 50132
Theoretical pI: Translated: 7.30; Mature: 7.30
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFSQKNLIFLISQPRAGSTLTQRILGSHQDIHTISEPWIMLHPFYALRDKGCQMEYSA CCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCHHHCCCCEEEECCHHHHHCCCCCEEHHH VNSKKGLNNFLWLHPQGEEAYFQSVNKMCLNLYEGVIKESGKKYFLDKTPRYYYILPELY CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECHHHH RTFPSAKYIFLLRNPLAVLCSIFNTFIQEHWWRIQYYQGDLLKAPILIAQGMVELQNKSI HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHCCCEE VLSYEHLLVNPNQEIKKVCKFLNIPFDEKILNYGESSSQKWEFGDQSQIYQEKTPNSQHR EEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHH DRWKKDLDNPIIWQCVSNYLEFLGNDLLNSLGYSYEEVKNILSDYSYQTNIVLPPALKDF HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECHHHHHH FTSANLFKNKALQPYLEAVELNPQIFHPYLDLGKALLEKKDFKKALNYLQIALKLAPYIP HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EIHFLIGENLLGLGELDQAIIYYQKTIDLDFRFVKNYDKIESTIMALKEVAQVNPNHQEI HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH ANLIKTITNI HHHHHHHHCC >Mature Secondary Structure SDFSQKNLIFLISQPRAGSTLTQRILGSHQDIHTISEPWIMLHPFYALRDKGCQMEYSA CCCCCCCEEEEEECCCCCHHHHHHHHCCCCCHHHCCCCEEEECCHHHHHCCCCCEEHHH VNSKKGLNNFLWLHPQGEEAYFQSVNKMCLNLYEGVIKESGKKYFLDKTPRYYYILPELY CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECHHHH RTFPSAKYIFLLRNPLAVLCSIFNTFIQEHWWRIQYYQGDLLKAPILIAQGMVELQNKSI HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHCCCEE VLSYEHLLVNPNQEIKKVCKFLNIPFDEKILNYGESSSQKWEFGDQSQIYQEKTPNSQHR EEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHH DRWKKDLDNPIIWQCVSNYLEFLGNDLLNSLGYSYEEVKNILSDYSYQTNIVLPPALKDF HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECHHHHHH FTSANLFKNKALQPYLEAVELNPQIFHPYLDLGKALLEKKDFKKALNYLQIALKLAPYIP HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EIHFLIGENLLGLGELDQAIIYYQKTIDLDFRFVKNYDKIESTIMALKEVAQVNPNHQEI HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH ANLIKTITNI HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA