| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476667
Identifier: 113476667
GI number: 113476667
Start: 4779572
End: 4780357
Strand: Reverse
Name: 113476667
Synonym: Tery_3123
Alternate gene names: NA
Gene position: 4780357-4779572 (Counterclockwise)
Preceding gene: 113476668
Following gene: 113476666
Centisome position: 61.68
GC content: 31.42
Gene sequence:
>786_bases ATGATTTATCAAAATCGTAATCTCAGAATTAATAATATTAAAAGTTCTCCTTCGCGTCACTGTTATGGCATGGGTTTAGG TATTATTATTCTGGATGAAATATATCCTGGTTTTCCTGGTGATACACGCAATGCTAGTGCTTACCCTTTTCCTATTCAAT ATGAAATTGCTGAAGGTTTAGATGGGAAAAAATTACTTTTTCAAGAAGATAAATCTTCTTTCTTGTTACCTATTAAGATA GCAGCTCAAAAACTGGAGAAAATTGGTTGTCGGGCGATCGCTGGAGAATGTGGTTATTTTGCTTATTTTCAGACAGAAAT AGCTAATTGTGTTCAGATTCCGGTATTTATGTCTAGTTTATTACAAGTACCTTTAGCACAACAATTAATTAGACAAGATC AAGTAGTAGGTATTATCGTCTTTTCTAAAACCATTATAACTAATGCTCATTTACAAGGAGTAGGAATTACTTCTAATAGT AATTATATTATTGAAGGAATATTTGAAAATAATAATTGTTCAGAATTGACTGAACTCTATATGAATTCTAATCCTCTAGA AAGAAATGCTGATTATGAAAAAATTGAGCAACAATTAACCCAATTTGCACTTGATTTTAAACAAAAACATCCCCAGATAG GAGTTTTGCTATTAGAATGTTCGGGAATGCAACCTTTTGCCAGAGCTATTCAAGAAGCAATTAATCTTCCCGTTTTTAGT TGGGGTACTTTATTAGATTATGCTTATTCTATTGTTGTTCATCGTGATTATTATGGACATATTTAG
Upstream 100 bases:
>100_bases TTTGAAATACTGAGTTGAATATTTTTTTCATCCCCTTAAAAGAGGCAGGGCTATTTCATTCTATCTAAATCCTTAACTTA CAATAATTTTAGGTTTATAT
Downstream 100 bases:
>100_bases CCTGTTGTCTAAGTAAATAATGTTGTCTAAGTAAATAATAATGAACAATAAATTACAAGATATTAATTATTTATCGTCAA AAAAGACAGTTATTTTTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MIYQNRNLRINNIKSSPSRHCYGMGLGIIILDEIYPGFPGDTRNASAYPFPIQYEIAEGLDGKKLLFQEDKSSFLLPIKI AAQKLEKIGCRAIAGECGYFAYFQTEIANCVQIPVFMSSLLQVPLAQQLIRQDQVVGIIVFSKTIITNAHLQGVGITSNS NYIIEGIFENNNCSELTELYMNSNPLERNADYEKIEQQLTQFALDFKQKHPQIGVLLLECSGMQPFARAIQEAINLPVFS WGTLLDYAYSIVVHRDYYGHI
Sequences:
>Translated_261_residues MIYQNRNLRINNIKSSPSRHCYGMGLGIIILDEIYPGFPGDTRNASAYPFPIQYEIAEGLDGKKLLFQEDKSSFLLPIKI AAQKLEKIGCRAIAGECGYFAYFQTEIANCVQIPVFMSSLLQVPLAQQLIRQDQVVGIIVFSKTIITNAHLQGVGITSNS NYIIEGIFENNNCSELTELYMNSNPLERNADYEKIEQQLTQFALDFKQKHPQIGVLLLECSGMQPFARAIQEAINLPVFS WGTLLDYAYSIVVHRDYYGHI >Mature_261_residues MIYQNRNLRINNIKSSPSRHCYGMGLGIIILDEIYPGFPGDTRNASAYPFPIQYEIAEGLDGKKLLFQEDKSSFLLPIKI AAQKLEKIGCRAIAGECGYFAYFQTEIANCVQIPVFMSSLLQVPLAQQLIRQDQVVGIIVFSKTIITNAHLQGVGITSNS NYIIEGIFENNNCSELTELYMNSNPLERNADYEKIEQQLTQFALDFKQKHPQIGVLLLECSGMQPFARAIQEAINLPVFS WGTLLDYAYSIVVHRDYYGHI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29457; Mature: 29457
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYQNRNLRINNIKSSPSRHCYGMGLGIIILDEIYPGFPGDTRNASAYPFPIQYEIAEGL CCCCCCCEEEECCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEHHHCCC DGKKLLFQEDKSSFLLPIKIAAQKLEKIGCRAIAGECGYFAYFQTEIANCVQIPVFMSSL CCCEEEEECCCCCEEEEHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH LQVPLAQQLIRQDQVVGIIVFSKTIITNAHLQGVGITSNSNYIIEGIFENNNCSELTELY HCCHHHHHHHHCCCEEEEEEEEHHHHCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHH MNSNPLERNADYEKIEQQLTQFALDFKQKHPQIGVLLLECSGMQPFARAIQEAINLPVFS HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCC WGTLLDYAYSIVVHRDYYGHI HHHHHHHHHHEEEECCCCCCC >Mature Secondary Structure MIYQNRNLRINNIKSSPSRHCYGMGLGIIILDEIYPGFPGDTRNASAYPFPIQYEIAEGL CCCCCCCEEEECCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEHHHCCC DGKKLLFQEDKSSFLLPIKIAAQKLEKIGCRAIAGECGYFAYFQTEIANCVQIPVFMSSL CCCEEEEECCCCCEEEEHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH LQVPLAQQLIRQDQVVGIIVFSKTIITNAHLQGVGITSNSNYIIEGIFENNNCSELTELY HCCHHHHHHHHCCCEEEEEEEEHHHHCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHH MNSNPLERNADYEKIEQQLTQFALDFKQKHPQIGVLLLECSGMQPFARAIQEAINLPVFS HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCC WGTLLDYAYSIVVHRDYYGHI HHHHHHHHHHEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA