| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476041
Identifier: 113476041
GI number: 113476041
Start: 3719938
End: 3720738
Strand: Direct
Name: 113476041
Synonym: Tery_2412
Alternate gene names: NA
Gene position: 3719938-3720738 (Clockwise)
Preceding gene: 113476040
Following gene: 113476045
Centisome position: 48.0
GC content: 34.46
Gene sequence:
>801_bases ATGCTAATAATAATCAGCAACATTATCGCAATTTACAGAAAAGAATTACAAGGATATTTTGCCTCACCATTAGCTTATAC AATTACAGGAATATTTTGGCTATTGGGAGGATACTTTTTAGTAGCTATTTTATTAGGACCAGATGGAATTATTCAACAAA TTGCTACTAGAGACCAACTAGGAATTACAGAACCGCCAGTCGATGCACCCTACGAATTTTTGAAGGCTTATCTGGGTATT ATGGGTTCTCTTTCTTTATTTTTATTGCCTATGTTATCTATGAGTTTATATGCGGAAGAAAGAAAACGAGGCACTTTAGA ATTATTAGCAACTTCACCTTTAACTAACTGGACAGTGGCAACAGGAAAATTATTAGCTGTATTAACATTTTATATTTCTA TGGTATTGCCATTGTTGGGTTTGGAGGCTATTGCTCTTAATGCAGCAAAGCCACCTATTTCACCACTTTTATTATTGTCA GGACATGGGGGTTTAATATTACTAGCTGCGGCGGTATTATCATTAGGAATGTTTGTTTCTTCTTTAACAGATAGTGCTAT TTTATCTGCCATTCTGACATTTGCTTTGGTATTATTTCTCTGGGTAATTGATGTGGTAGCTAATGCTGTTAGTGGTCCTT TTGCACAGGCATTAAAACATTTATCTATGCTGACACATTACACTAATATTATTCAGGGACTTGTAGATACTGGCAGTATA ATTATGTTGTTGAGTTATGTTGTTTTGGGAGTATTTTTAACTGCTCAATCAATTGATGCTTTAAGGTTCCAACGTTCTTA A
Upstream 100 bases:
>100_bases ATCAAAAACCTTATCAGAAGGTTTCATAAAAGGTTACTACTGTGGTCTAATTAAGTGAAAACTGCTATAAATAAACGTAA CTAAGGAAGGAAGTAAATTA
Downstream 100 bases:
>100_bases TATTCAGGAAGAATACGGAAGTTAAAGGGAAAAAATTAGAGGCAAAAAAAAGGTTCATAAGAGAGAAGTTTTTTTTATGA CTATAGGGTTGAAAATTTTG
Product: ABC-2 type transporter
Products: NA
Alternate protein names: ABC-2 Type Transporter Superfamily; ABC Transporter Permease; ABC Transporter Permease Protein; ABC-2 Type Transport System Permease Protein; ABC-2 Type Transport System Permease; Abc Transporter Permease Protein; ABC-2 Type Transporter Permease; Permease Protein Of ABC Transporter; ABC Transporter Family Protein
Number of amino acids: Translated: 266; Mature: 266
Protein sequence:
>266_residues MLIIISNIIAIYRKELQGYFASPLAYTITGIFWLLGGYFLVAILLGPDGIIQQIATRDQLGITEPPVDAPYEFLKAYLGI MGSLSLFLLPMLSMSLYAEERKRGTLELLATSPLTNWTVATGKLLAVLTFYISMVLPLLGLEAIALNAAKPPISPLLLLS GHGGLILLAAAVLSLGMFVSSLTDSAILSAILTFALVLFLWVIDVVANAVSGPFAQALKHLSMLTHYTNIIQGLVDTGSI IMLLSYVVLGVFLTAQSIDALRFQRS
Sequences:
>Translated_266_residues MLIIISNIIAIYRKELQGYFASPLAYTITGIFWLLGGYFLVAILLGPDGIIQQIATRDQLGITEPPVDAPYEFLKAYLGI MGSLSLFLLPMLSMSLYAEERKRGTLELLATSPLTNWTVATGKLLAVLTFYISMVLPLLGLEAIALNAAKPPISPLLLLS GHGGLILLAAAVLSLGMFVSSLTDSAILSAILTFALVLFLWVIDVVANAVSGPFAQALKHLSMLTHYTNIIQGLVDTGSI IMLLSYVVLGVFLTAQSIDALRFQRS >Mature_266_residues MLIIISNIIAIYRKELQGYFASPLAYTITGIFWLLGGYFLVAILLGPDGIIQQIATRDQLGITEPPVDAPYEFLKAYLGI MGSLSLFLLPMLSMSLYAEERKRGTLELLATSPLTNWTVATGKLLAVLTFYISMVLPLLGLEAIALNAAKPPISPLLLLS GHGGLILLAAAVLSLGMFVSSLTDSAILSAILTFALVLFLWVIDVVANAVSGPFAQALKHLSMLTHYTNIIQGLVDTGSI IMLLSYVVLGVFLTAQSIDALRFQRS
Specific function: Unknown
COG id: COG1277
COG function: function code R; ABC-type transport system involved in multi-copper enzyme maturation, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28645; Mature: 28645
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIIISNIIAIYRKELQGYFASPLAYTITGIFWLLGGYFLVAILLGPDGIIQQIATRDQL CEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC GITEPPVDAPYEFLKAYLGIMGSLSLFLLPMLSMSLYAEERKRGTLELLATSPLTNWTVA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHH TGKLLAVLTFYISMVLPLLGLEAIALNAAKPPISPLLLLSGHGGLILLAAAVLSLGMFVS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH SLTDSAILSAILTFALVLFLWVIDVVANAVSGPFAQALKHLSMLTHYTNIIQGLVDTGSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH IMLLSYVVLGVFLTAQSIDALRFQRS HHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLIIISNIIAIYRKELQGYFASPLAYTITGIFWLLGGYFLVAILLGPDGIIQQIATRDQL CEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC GITEPPVDAPYEFLKAYLGIMGSLSLFLLPMLSMSLYAEERKRGTLELLATSPLTNWTVA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHH TGKLLAVLTFYISMVLPLLGLEAIALNAAKPPISPLLLLSGHGGLILLAAAVLSLGMFVS HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH SLTDSAILSAILTFALVLFLWVIDVVANAVSGPFAQALKHLSMLTHYTNIIQGLVDTGSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH IMLLSYVVLGVFLTAQSIDALRFQRS HHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA