| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475991
Identifier: 113475991
GI number: 113475991
Start: 3644581
End: 3646008
Strand: Direct
Name: 113475991
Synonym: Tery_2359
Alternate gene names: NA
Gene position: 3644581-3646008 (Clockwise)
Preceding gene: 113475990
Following gene: 113475992
Centisome position: 47.03
GC content: 41.04
Gene sequence:
>1428_bases ATGACATCCTCTCTATTCACTCTATCCCTAACTTCATTAGTCACCCTGATCCATGAAGATGACAATATCATATTACAAGC TCCCATCCGCAGTCCACTCAAAAAAACTACTCCAACTCGCCAAGTCAAATTTGAACATCCCTCCTCAGGTTTAATATCGG CATTAAATCATCTCAAGTCTTCCCAGAAAACCTACCCTCAACTTAAAGCATTAGTGGTAGCTGCTGATGGCGAGGAAGCG GGAGAAAGATTTGATGTAGAATTGGAAAAACTCATAAATACAGGTTGGGTTTCCCATTCCCTTTACCCCCTGGCAACAGT TATCCCAATAGTGGAAAAAAACTATCGCTTTAAGTCTCCAGAAATTGCACAACTACAAGGAAAATTTACCTTGTCCCGTT TTGCCTATTTACACCAAAGCCAAGGGAAAACCATCATAGAATGTCCCCTGTCTACTAGTCAAATAATTGCATTAGACTGG CGATGTGGTGCCTTGCTTGCCAAATTATCTCAACCACAAACCCCTAGCAGTTTGAGCGCAGATATTCCCGATATTACTGA AGAAATTGCCCAAAAATTCCTGGCTTTGTTGATGGCAACTCAAATGTTATCCCCAGAAACCGAACCCACCCCGCTGATGT ATTGGGAATTTCACGACTTGCTATTTCACAGTCGCTCTCGGATAGGAAGACACAACAACCCAACTGGAGGCACAATGAGA TTTTTTGGCAAAACTGAACCTTTGCCTATTGTCAAACCACCAATGAGTGACAAAGTTATTAAACTGGTGCAACCTAACTT AGAATATTTGACTCAAATTGACATTCCCTTGACAAAAGCATTGGAGTTACGCCAGTCTATTCGGGAGTACGATGAACAAC CAATACGGTTGCAACAATTGGGAAAATTGTTATATTGTTGCGCTAGGATTAAAAAAATAGAGACTATGGAAACAGAGGAA TTCGGTACACTGCATTTAAACTATCGTCCTTATCCTTGTGGCGGTGCAATTTATGAGTTGGAAATTTATCCAGTGGTGAA CCGTTGTCAAGGTTTGGCAGCAGGGGTCTATCACTATCAACCTTTGGAGCATTGTCTGTATCAAATTTCGGCTCATGAAA CACAAGTGGAGGCATTGATAGAGGATGCTTACAAGTCTAGTGGTGAACAAGATCAACCTCAAGTTTTGTTGGTAATAACA GCTAGGTTTGGGCGAATATTTTGGAAGTATGAATCAATTGCTTATGCTTTGATATTGAAGCACGTTGGTGTATTGTATCA AACTTTTTATTTAATGGCAACGGGGATGCACTTAGCTCCCTGTGCTTTGGGGATAGGAGATGCTGATAATTTTGCTCAGA TAACAGGGTTAGATTATTATGAAGAGTCTTCTGTTGGGGAGTTTCTTTTGGGTTCGGTGAGGAACTAG
Upstream 100 bases:
>100_bases CCCGTGGGGTAGTAATGAAAAAAGTAATTAATATAGACAACTTTTGCAACTTTATAAGTTAAAAATTAAAAAAAATTAAA AGTTAAAAGTTAAAACTCAA
Downstream 100 bases:
>100_bases TTATTACGGCGCTACCCCGTTTTTTCGGTAAAAATTTAGTTTCCGGAGATATCTAATAAGAATGTAGAGCACCGAATATA TGGAGAGTTATTTTCTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NAD(P)H-Flavin Oxidoreductase; SagB-Type Dehydrogenase Domain-Containing Protein; NADH Oxidase; SagB-Type Dehydrogenase Domain Protein; Oxidoreductase; SagB-Type Dehydrogenase Domain; Streptolysin Associated Protein SagB; Goadsporin Biosynthetic Protein; Nitroreductase Family Protein
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MTSSLFTLSLTSLVTLIHEDDNIILQAPIRSPLKKTTPTRQVKFEHPSSGLISALNHLKSSQKTYPQLKALVVAADGEEA GERFDVELEKLINTGWVSHSLYPLATVIPIVEKNYRFKSPEIAQLQGKFTLSRFAYLHQSQGKTIIECPLSTSQIIALDW RCGALLAKLSQPQTPSSLSADIPDITEEIAQKFLALLMATQMLSPETEPTPLMYWEFHDLLFHSRSRIGRHNNPTGGTMR FFGKTEPLPIVKPPMSDKVIKLVQPNLEYLTQIDIPLTKALELRQSIREYDEQPIRLQQLGKLLYCCARIKKIETMETEE FGTLHLNYRPYPCGGAIYELEIYPVVNRCQGLAAGVYHYQPLEHCLYQISAHETQVEALIEDAYKSSGEQDQPQVLLVIT ARFGRIFWKYESIAYALILKHVGVLYQTFYLMATGMHLAPCALGIGDADNFAQITGLDYYEESSVGEFLLGSVRN
Sequences:
>Translated_475_residues MTSSLFTLSLTSLVTLIHEDDNIILQAPIRSPLKKTTPTRQVKFEHPSSGLISALNHLKSSQKTYPQLKALVVAADGEEA GERFDVELEKLINTGWVSHSLYPLATVIPIVEKNYRFKSPEIAQLQGKFTLSRFAYLHQSQGKTIIECPLSTSQIIALDW RCGALLAKLSQPQTPSSLSADIPDITEEIAQKFLALLMATQMLSPETEPTPLMYWEFHDLLFHSRSRIGRHNNPTGGTMR FFGKTEPLPIVKPPMSDKVIKLVQPNLEYLTQIDIPLTKALELRQSIREYDEQPIRLQQLGKLLYCCARIKKIETMETEE FGTLHLNYRPYPCGGAIYELEIYPVVNRCQGLAAGVYHYQPLEHCLYQISAHETQVEALIEDAYKSSGEQDQPQVLLVIT ARFGRIFWKYESIAYALILKHVGVLYQTFYLMATGMHLAPCALGIGDADNFAQITGLDYYEESSVGEFLLGSVRN >Mature_474_residues TSSLFTLSLTSLVTLIHEDDNIILQAPIRSPLKKTTPTRQVKFEHPSSGLISALNHLKSSQKTYPQLKALVVAADGEEAG ERFDVELEKLINTGWVSHSLYPLATVIPIVEKNYRFKSPEIAQLQGKFTLSRFAYLHQSQGKTIIECPLSTSQIIALDWR CGALLAKLSQPQTPSSLSADIPDITEEIAQKFLALLMATQMLSPETEPTPLMYWEFHDLLFHSRSRIGRHNNPTGGTMRF FGKTEPLPIVKPPMSDKVIKLVQPNLEYLTQIDIPLTKALELRQSIREYDEQPIRLQQLGKLLYCCARIKKIETMETEEF GTLHLNYRPYPCGGAIYELEIYPVVNRCQGLAAGVYHYQPLEHCLYQISAHETQVEALIEDAYKSSGEQDQPQVLLVITA RFGRIFWKYESIAYALILKHVGVLYQTFYLMATGMHLAPCALGIGDADNFAQITGLDYYEESSVGEFLLGSVRN
Specific function: Unknown
COG id: COG0778
COG function: function code C; Nitroreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53555; Mature: 53424
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSLFTLSLTSLVTLIHEDDNIILQAPIRSPLKKTTPTRQVKFEHPSSGLISALNHLKS CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHH SQKTYPQLKALVVAADGEEAGERFDVELEKLINTGWVSHSLYPLATVIPIVEKNYRFKSP HHHHCCCEEEEEEEECCHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC EIAQLQGKFTLSRFAYLHQSQGKTIIECPLSTSQIIALDWRCGALLAKLSQPQTPSSLSA CHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC DIPDITEEIAQKFLALLMATQMLSPETEPTPLMYWEFHDLLFHSRSRIGRHNNPTGGTMR CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCEEE FFGKTEPLPIVKPPMSDKVIKLVQPNLEYLTQIDIPLTKALELRQSIREYDEQPIRLQQL ECCCCCCCCCCCCCCCHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHHHHCCCCHHHHHH GKLLYCCARIKKIETMETEEFGTLHLNYRPYPCGGAIYELEIYPVVNRCQGLAAGVYHYQ HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEEHHHHHCHHHHHHHHHH PLEHCLYQISAHETQVEALIEDAYKSSGEQDQPQVLLVITARFGRIFWKYESIAYALILK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH HVGVLYQTFYLMATGMHLAPCALGIGDADNFAQITGLDYYEESSVGEFLLGSVRN HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHCCCCC >Mature Secondary Structure TSSLFTLSLTSLVTLIHEDDNIILQAPIRSPLKKTTPTRQVKFEHPSSGLISALNHLKS CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHH SQKTYPQLKALVVAADGEEAGERFDVELEKLINTGWVSHSLYPLATVIPIVEKNYRFKSP HHHHCCCEEEEEEEECCHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC EIAQLQGKFTLSRFAYLHQSQGKTIIECPLSTSQIIALDWRCGALLAKLSQPQTPSSLSA CHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC DIPDITEEIAQKFLALLMATQMLSPETEPTPLMYWEFHDLLFHSRSRIGRHNNPTGGTMR CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCEEE FFGKTEPLPIVKPPMSDKVIKLVQPNLEYLTQIDIPLTKALELRQSIREYDEQPIRLQQL ECCCCCCCCCCCCCCCHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHHHHCCCCHHHHHH GKLLYCCARIKKIETMETEEFGTLHLNYRPYPCGGAIYELEIYPVVNRCQGLAAGVYHYQ HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEEHHHHHCHHHHHHHHHH PLEHCLYQISAHETQVEALIEDAYKSSGEQDQPQVLLVITARFGRIFWKYESIAYALILK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH HVGVLYQTFYLMATGMHLAPCALGIGDADNFAQITGLDYYEESSVGEFLLGSVRN HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA