Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475960

Identifier: 113475960

GI number: 113475960

Start: 3600515

End: 3601087

Strand: Direct

Name: 113475960

Synonym: Tery_2326

Alternate gene names: NA

Gene position: 3600515-3601087 (Clockwise)

Preceding gene: 113475959

Following gene: 113475961

Centisome position: 46.46

GC content: 37.17

Gene sequence:

>573_bases
ATGGCTCTTATAGATATATGGGAAAAAAGCACTGAAATTAGGAAAGATGAGGTGCTACAGATTCACGAGACAGGTAAAGA
AGAGAAGAAGCAAAGGCAAGATGTCATTGTTCAAAGGCAAAATGAGGTGCAAGTTATTCATAATGAAGCTTTAGAAGAGA
AGAATCAAAGGCAAGACGTCATTGTTAAAAGGCAAAATGAGGTGCAAGTTATTCATAATGAAGCTTTAGAAGAGAAGAAG
CAAAGGCAAGATGTCATTGTTGAAAGGCAAAATGATACAAAAGCTGATCATGAAAAAGCTGTAGCAGATAAGTCCCAAAG
GCAAGACGTCATTGTTCAAAGGCAAAATGATACGAAAGCTGATCATGAAAAAGCTGTAGCAGATAAGTCCCAAAGGCAAG
ATGTCATTGTTGAAAGGCAAAATGATACGAAAGCTGATCATGAAAAAGCTCTAGCTGACAAGAAGCAAAGGCAAGATGAA
AAGGATGAACGGAGATCCTACGTTTGGGGTTATAAAGCTGGAATTGAAACAAAACAAACGAGTAGTAATGATTCATATCA
GCAAATAGCATAA

Upstream 100 bases:

>100_bases
CTTAATTTTTTCAGTTGTACTTCCTTGATTTCTTTTACTAACTTTACTACTTTATTGTATCTGCTGCTGTTACTTAATTA
ATAATAAGGCACAGGTTTTT

Downstream 100 bases:

>100_bases
GCATCATGATCATTGGAATGAATTAATTAATATAGTTTAGTTAAGGATTTCCTTTGACAGGTAGTTAAGAGCACAAAGTG
TGGAAAAAGTAATTAAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MALIDIWEKSTEIRKDEVLQIHETGKEEKKQRQDVIVQRQNEVQVIHNEALEEKNQRQDVIVKRQNEVQVIHNEALEEKK
QRQDVIVERQNDTKADHEKAVADKSQRQDVIVQRQNDTKADHEKAVADKSQRQDVIVERQNDTKADHEKALADKKQRQDE
KDERRSYVWGYKAGIETKQTSSNDSYQQIA

Sequences:

>Translated_190_residues
MALIDIWEKSTEIRKDEVLQIHETGKEEKKQRQDVIVQRQNEVQVIHNEALEEKNQRQDVIVKRQNEVQVIHNEALEEKK
QRQDVIVERQNDTKADHEKAVADKSQRQDVIVQRQNDTKADHEKAVADKSQRQDVIVERQNDTKADHEKALADKKQRQDE
KDERRSYVWGYKAGIETKQTSSNDSYQQIA
>Mature_189_residues
ALIDIWEKSTEIRKDEVLQIHETGKEEKKQRQDVIVQRQNEVQVIHNEALEEKNQRQDVIVKRQNEVQVIHNEALEEKKQ
RQDVIVERQNDTKADHEKAVADKSQRQDVIVQRQNDTKADHEKAVADKSQRQDVIVERQNDTKADHEKALADKKQRQDEK
DERRSYVWGYKAGIETKQTSSNDSYQQIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22403; Mature: 22272

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIDIWEKSTEIRKDEVLQIHETGKEEKKQRQDVIVQRQNEVQVIHNEALEEKNQRQDV
CCEECCHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHH
IVKRQNEVQVIHNEALEEKKQRQDVIVERQNDTKADHEKAVADKSQRQDVIVQRQNDTKA
EEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCH
DHEKAVADKSQRQDVIVERQNDTKADHEKALADKKQRQDEKDERRSYVWGYKAGIETKQT
HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
SSNDSYQQIA
CCCCCHHHCC
>Mature Secondary Structure 
ALIDIWEKSTEIRKDEVLQIHETGKEEKKQRQDVIVQRQNEVQVIHNEALEEKNQRQDV
CEECCHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHH
IVKRQNEVQVIHNEALEEKKQRQDVIVERQNDTKADHEKAVADKSQRQDVIVQRQNDTKA
EEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCH
DHEKAVADKSQRQDVIVERQNDTKADHEKALADKKQRQDEKDERRSYVWGYKAGIETKQT
HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
SSNDSYQQIA
CCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA