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The map label for this gene is ycf12

Identifier: 113475940

GI number: 113475940

Start: 3570546

End: 3570677

Strand: Direct

Name: ycf12

Synonym: Tery_2304

Alternate gene names: 113475940

Gene position: 3570546-3570677 (Clockwise)

Preceding gene: 113475936

Following gene: 113475942

Centisome position: 46.07

GC content: 40.15

Gene sequence:

>132_bases
ATGGGGTTTTTAACTGATTTTTTCAGCAACATTAACTTTGAAACCATCGCCCAGTTAACAATGCTAGCCATGGTTTTGAT
TGCTGGCCCGGTAGTAATTGTGTTATTAGCACTTCAGGGAGGCGATCTTTAA

Upstream 100 bases:

>100_bases
TGAGTTTTGTAAAGTTTATTAAATTAAATAGACAATCCCTTGATAAAATAAAAAATAGTTTTTTAGTTCACTATCTATTT
TATTAAATTATAGAGGAAAT

Downstream 100 bases:

>100_bases
TCCTTTCCGCCCAGAGCTGATAGTAGTAGATAGTAGGTTTTAAGTCTTAGGAAGTAGGTAGCAGGTAAACTTTTATCCCC
CAGAGCTTGCAGATGTGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 43; Mature: 42

Protein sequence:

>43_residues
MGFLTDFFSNINFETIAQLTMLAMVLIAGPVVIVLLALQGGDL

Sequences:

>Translated_43_residues
MGFLTDFFSNINFETIAQLTMLAMVLIAGPVVIVLLALQGGDL
>Mature_42_residues
GFLTDFFSNINFETIAQLTMLAMVLIAGPVVIVLLALQGGDL

Specific function: A core subunit of photosystem II (PSII)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf12 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF12_TRIEI (Q112P6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_722001.1
- GeneID:   4243299
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_2304
- eggNOG:   NOG119170
- HOGENOM:   HBG440444
- ProtClustDB:   PRK13686
- BioCyc:   TERY203124:TERY_2304-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_01329
- InterPro:   IPR010284

Pfam domain/function: PF05969 DUF888

EC number: NA

Molecular weight: Translated: 4599; Mature: 4467

Theoretical pI: Translated: 3.38; Mature: 3.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x18622790)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFLTDFFSNINFETIAQLTMLAMVLIAGPVVIVLLALQGGDL
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure 
GFLTDFFSNINFETIAQLTMLAMVLIAGPVVIVLLALQGGDL
CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA