| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is sglT [H]
Identifier: 113475925
GI number: 113475925
Start: 3557804
End: 3559585
Strand: Direct
Name: sglT [H]
Synonym: Tery_2288
Alternate gene names: 113475925
Gene position: 3557804-3559585 (Clockwise)
Preceding gene: 113475924
Following gene: 113475926
Centisome position: 45.91
GC content: 32.77
Gene sequence:
>1782_bases ATGGAAAAAATTGATTATATAATTGTTACAATTTATCTGTTATTTATAGTAATCTTTGGATTTTTTATACAAAGAAAAGC ATCGACAGGAATAGAGTCTTACTTTCTCGGAAATCGTAATCTTCCTTGGTGGATTTTGGGTGCTTCTGGTATGGCTTCTA ATACTGATTTAGCTGGTACTATGCTATTAACTTCTTTAGTCTATTCTCTGGGAACTAAGGGCTTTTTTATTGAAATTCGG GGTGGAGTTGTATTAATTATGGCGTTCCTAATGACGTTTATGGGAAAGTGGAATCGTCGGGCTCAAGTAATGACTATTGC AGAATGGATGGAGTTACGTTTTGGTAAGAATAGGGAAGGAAATATAGCCAGAATTATTAGTGCGGTTGCTAATATTATTT TTGCTATTGGTACCATGAGTTATTTTGCTCTTGGAGGAGGAAAATTTTTAGGAGGATTTTTAGGTATTGATGATAGAGTT GCTGGAATATTGCTGATTTTATTGGCTCTTATCTATACAGCTGTAAGTGGATTTTATGGGGTTGTTTTGACAGATGTTTT CCAGGGAATTTTGATTTTTGTTGCAATTATATATATCTGTTTTCTGGCTTTTCAAATAGTAAACTTACCAGAGAATTTTG TGGTTTCAATTCCAGGTACGGAACAATTACAAGAATTGAGTTTGAGAGAATGGAGCAGTCTTTTTCCACCAATTAAAATT GACTTACCAGGAGATTATAGTATTTTTAATTTGTTTGGTGGCGTGATGTTATTTTATGTTTTTAAAGTATTTCTAGAAGG CGGTGCTGGAGGAGGTGGTTATATGATTCAACGTTACTTCGCTGCTAAGAATGATCGGGAAGCTGGTTTACTTTCTTTAT TCTGGATTTTTTTACTATCTTTTCGCTGGCCTTTGGTTACATCTTTGGCAATATTAGGAATAGATTATGGTTTGAAAAAT CAGATAATTTCTGACCCAGAATTAGTCTTGCCTACTGTAATTTCTGAATATATTCCAGCGGGAGTTAAAGGTTTATTGGT TGCCTGTTTTATTGCTGCTGCAATGTCAACTTTTGATTCGATAATTAATGCTAGTGCTGCCTATTGGGTAAAGGATATTT ATCAAGCTTATATTAAACCTGAAGCTAATAATCAACAATTGGTTAATCAAGGTCGTTTAGCTTCGGTTGTTATTGTTAGT TTGGGATTAATTTTTAGTTTTAATATTACGAATATTAATGATATTTGGGGATGGTTAACTTTAGGGTTAGGAACTGGGTT GTTTATTCCTTTAGTATTGAGATGGTATTGGTGGCGATTTAATGGTTATGGATTTGCCATTGGTACTGGTGCAGGTTTAG TTGGAGCTATTTTGACAAAAGCAGTTATTTTACCTTTTTTGAATCTGCCTCAACTTCAAGAATATATTCTGTTTTTAGTT CCAAGTATTTGTTCTTTTTTAGGATGTATTTTAGGAACATTGTTAACTCCATCAACTAATTTGGAAGTGATTGATAATTT TTATCGGGTAACTCGACCTTTTGGTTTTTGGGGAGTAGTTAGTAAGAATTTACCAACCAATATTCAAGCAAAAATTAAAA GAGAAAATCGACGAGATATTCTGGCAACATTTATTGCAATTCCTTGGCAGTTGGTTTTATTTTTAATGGGAATAATTTTA ATGATGAAACAGTGGGATAGTTTTGGTATTTTATTATTAATGTTTATTTTGTTGTCGATAGGATTATATTTTACTTGGTT TAAGCATCTAGAAAAAATATAG
Upstream 100 bases:
>100_bases TTTAGAGGTAGAGGTTTAAATCTCATTCTTACACATCAAAAAAAATGAACTCAATACTTAAATTTTGAAGGCTAATTTTT TTTGATTTAGAGATATTTTT
Downstream 100 bases:
>100_bases AAATCAAAAATAATTTTTTGAGAATAATTAAATAGGGTTTGTCGAAAAAAAAACTGAAAGTATTTACAAATGAAGCTTTA GCTTTTTTTGTCTGAAAAAG
Product: Na+/solute symporter
Products: NA
Alternate protein names: Na(+)/glucose symporter [H]
Number of amino acids: Translated: 593; Mature: 593
Protein sequence:
>593_residues MEKIDYIIVTIYLLFIVIFGFFIQRKASTGIESYFLGNRNLPWWILGASGMASNTDLAGTMLLTSLVYSLGTKGFFIEIR GGVVLIMAFLMTFMGKWNRRAQVMTIAEWMELRFGKNREGNIARIISAVANIIFAIGTMSYFALGGGKFLGGFLGIDDRV AGILLILLALIYTAVSGFYGVVLTDVFQGILIFVAIIYICFLAFQIVNLPENFVVSIPGTEQLQELSLREWSSLFPPIKI DLPGDYSIFNLFGGVMLFYVFKVFLEGGAGGGGYMIQRYFAAKNDREAGLLSLFWIFLLSFRWPLVTSLAILGIDYGLKN QIISDPELVLPTVISEYIPAGVKGLLVACFIAAAMSTFDSIINASAAYWVKDIYQAYIKPEANNQQLVNQGRLASVVIVS LGLIFSFNITNINDIWGWLTLGLGTGLFIPLVLRWYWWRFNGYGFAIGTGAGLVGAILTKAVILPFLNLPQLQEYILFLV PSICSFLGCILGTLLTPSTNLEVIDNFYRVTRPFGFWGVVSKNLPTNIQAKIKRENRRDILATFIAIPWQLVLFLMGIIL MMKQWDSFGILLLMFILLSIGLYFTWFKHLEKI
Sequences:
>Translated_593_residues MEKIDYIIVTIYLLFIVIFGFFIQRKASTGIESYFLGNRNLPWWILGASGMASNTDLAGTMLLTSLVYSLGTKGFFIEIR GGVVLIMAFLMTFMGKWNRRAQVMTIAEWMELRFGKNREGNIARIISAVANIIFAIGTMSYFALGGGKFLGGFLGIDDRV AGILLILLALIYTAVSGFYGVVLTDVFQGILIFVAIIYICFLAFQIVNLPENFVVSIPGTEQLQELSLREWSSLFPPIKI DLPGDYSIFNLFGGVMLFYVFKVFLEGGAGGGGYMIQRYFAAKNDREAGLLSLFWIFLLSFRWPLVTSLAILGIDYGLKN QIISDPELVLPTVISEYIPAGVKGLLVACFIAAAMSTFDSIINASAAYWVKDIYQAYIKPEANNQQLVNQGRLASVVIVS LGLIFSFNITNINDIWGWLTLGLGTGLFIPLVLRWYWWRFNGYGFAIGTGAGLVGAILTKAVILPFLNLPQLQEYILFLV PSICSFLGCILGTLLTPSTNLEVIDNFYRVTRPFGFWGVVSKNLPTNIQAKIKRENRRDILATFIAIPWQLVLFLMGIIL MMKQWDSFGILLLMFILLSIGLYFTWFKHLEKI >Mature_593_residues MEKIDYIIVTIYLLFIVIFGFFIQRKASTGIESYFLGNRNLPWWILGASGMASNTDLAGTMLLTSLVYSLGTKGFFIEIR GGVVLIMAFLMTFMGKWNRRAQVMTIAEWMELRFGKNREGNIARIISAVANIIFAIGTMSYFALGGGKFLGGFLGIDDRV AGILLILLALIYTAVSGFYGVVLTDVFQGILIFVAIIYICFLAFQIVNLPENFVVSIPGTEQLQELSLREWSSLFPPIKI DLPGDYSIFNLFGGVMLFYVFKVFLEGGAGGGGYMIQRYFAAKNDREAGLLSLFWIFLLSFRWPLVTSLAILGIDYGLKN QIISDPELVLPTVISEYIPAGVKGLLVACFIAAAMSTFDSIINASAAYWVKDIYQAYIKPEANNQQLVNQGRLASVVIVS LGLIFSFNITNINDIWGWLTLGLGTGLFIPLVLRWYWWRFNGYGFAIGTGAGLVGAILTKAVILPFLNLPQLQEYILFLV PSICSFLGCILGTLLTPSTNLEVIDNFYRVTRPFGFWGVVSKNLPTNIQAKIKRENRRDILATFIAIPWQLVLFLMGIIL MMKQWDSFGILLLMFILLSIGLYFTWFKHLEKI
Specific function: Actively transports glucose into cells by Na(+) cotransport [H]
COG id: COG0591
COG function: function code ER; Na+/proline symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI17941285, Length=427, Percent_Identity=24.1217798594848, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI310128183, Length=444, Percent_Identity=24.5495495495495, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI14140236, Length=534, Percent_Identity=23.5955056179775, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI109659836, Length=594, Percent_Identity=22.3905723905724, Blast_Score=81, Evalue=3e-15, Organism=Homo sapiens, GI110835708, Length=597, Percent_Identity=23.1155778894472, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI4507031, Length=489, Percent_Identity=22.6993865030675, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI206597483, Length=432, Percent_Identity=22.2222222222222, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI109659839, Length=601, Percent_Identity=22.1297836938436, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI206597487, Length=435, Percent_Identity=22.5287356321839, Blast_Score=73, Evalue=6e-13, Organism=Escherichia coli, GI1790113, Length=396, Percent_Identity=25.2525252525253, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 66312; Mature: 66312
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKIDYIIVTIYLLFIVIFGFFIQRKASTGIESYFLGNRNLPWWILGASGMASNTDLAGT CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCCCCEEEEECCCCCCCCCHHHH MLLTSLVYSLGTKGFFIEIRGGVVLIMAFLMTFMGKWNRRAQVMTIAEWMELRFGKNREG HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC NIARIISAVANIIFAIGTMSYFALGGGKFLGGFLGIDDRVAGILLILLALIYTAVSGFYG CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH VVLTDVFQGILIFVAIIYICFLAFQIVNLPENFVVSIPGTEQLQELSLREWSSLFPPIKI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEE DLPGDYSIFNLFGGVMLFYVFKVFLEGGAGGGGYMIQRYFAAKNDREAGLLSLFWIFLLS ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH FRWPLVTSLAILGIDYGLKNQIISDPELVLPTVISEYIPAGVKGLLVACFIAAAMSTFDS HHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH IINASAAYWVKDIYQAYIKPEANNQQLVNQGRLASVVIVSLGLIFSFNITNINDIWGWLT HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHEECCCCHHHHHHHHH LGLGTGLFIPLVLRWYWWRFNGYGFAIGTGAGLVGAILTKAVILPFLNLPQLQEYILFLV HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH PSICSFLGCILGTLLTPSTNLEVIDNFYRVTRPFGFWGVVSKNLPTNIQAKIKRENRRDI HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHH LATFIAIPWQLVLFLMGIILMMKQWDSFGILLLMFILLSIGLYFTWFKHLEKI HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEKIDYIIVTIYLLFIVIFGFFIQRKASTGIESYFLGNRNLPWWILGASGMASNTDLAGT CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCCCCEEEEECCCCCCCCCHHHH MLLTSLVYSLGTKGFFIEIRGGVVLIMAFLMTFMGKWNRRAQVMTIAEWMELRFGKNREG HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC NIARIISAVANIIFAIGTMSYFALGGGKFLGGFLGIDDRVAGILLILLALIYTAVSGFYG CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH VVLTDVFQGILIFVAIIYICFLAFQIVNLPENFVVSIPGTEQLQELSLREWSSLFPPIKI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEE DLPGDYSIFNLFGGVMLFYVFKVFLEGGAGGGGYMIQRYFAAKNDREAGLLSLFWIFLLS ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH FRWPLVTSLAILGIDYGLKNQIISDPELVLPTVISEYIPAGVKGLLVACFIAAAMSTFDS HHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH IINASAAYWVKDIYQAYIKPEANNQQLVNQGRLASVVIVSLGLIFSFNITNINDIWGWLT HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHEECCCCHHHHHHHHH LGLGTGLFIPLVLRWYWWRFNGYGFAIGTGAGLVGAILTKAVILPFLNLPQLQEYILFLV HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH PSICSFLGCILGTLLTPSTNLEVIDNFYRVTRPFGFWGVVSKNLPTNIQAKIKRENRRDI HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHH LATFIAIPWQLVLFLMGIILMMKQWDSFGILLLMFILLSIGLYFTWFKHLEKI HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8652595; 10835424; 10757971 [H]