Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475895

Identifier: 113475895

GI number: 113475895

Start: 3506525

End: 3507313

Strand: Direct

Name: 113475895

Synonym: Tery_2254

Alternate gene names: NA

Gene position: 3506525-3507313 (Clockwise)

Preceding gene: 113475892

Following gene: 113475896

Centisome position: 45.24

GC content: 30.93

Gene sequence:

>789_bases
ATGTGTAGATTATTAGGTTATCTTGGTGAGCCAATCTTATTAGAGTCCATTCTTACTCAACCAAAACACTCGTTAATAGT
CCAAAGTTATCAACCCCAAGAAATGCAAGAGTCATTACTAAATGCTGATGGATTTGGATTAGGTTGGTATGATACTCAAA
AGCAGACTTCACCTTTTACTTATAAAAATACCCAACCTATTTGGAATGATATAAATCTTAAGAGTCTTGGTGGTTATATA
GAGTCAGGCTGTATTCTAGGTTATGTTAGAAGTGCAACTCTTGGTCAAGGAATTGATATCAGTAACTGTCAGCCATTTAA
TTACAAAAATATACTATTTATTCACAATGGCTATATTGATCAATTTCGATCTACTCTTTATAAACCCATACGGGATTCTC
TCCAAGATATTCCATATTTATTGATTAACGGTAATACGGACTCTGAACATATTTTTGCTTTGTTAATTAATGAAGTTCTT
GAAATAATTAAGTATAACTTTCAAGAAGCTTTACATAATATATTAATGTTTTTGAAAAAAATTGCTCAGGAAAATAAAGT
CAAATTTTTGGCAAATACAATTATTACAGACGGACATCAATTAGTTGCTTCTAGATTTGCTCAAGAGGCAAGTTCACCTA
GTCTTTATTGGTTAAAAAATTCTTCTAAATTTCCTAATTCTGTAATTATAGCTTCCGAACCTTTGTTTGCAGATGATTGG
CAAAAGTTTCCAGAACAAAGTATCACTAAAGTCAGTGAAAATCTTGATATTCAGATCTATCAAATATGA

Upstream 100 bases:

>100_bases
CTGAATTAGTTAAAAATGGATTGTATTGTTCATCAAAATGTTATGGTAATTAAATTACTAATATGTAGATGTATACTAAA
ATCAAAAATCAAAAAATTAT

Downstream 100 bases:

>100_bases
AAGAGAAATATGAGATATTTATCCCAAGAAAAATATCTCTATTTTAGATATTATATTTTAAGTGAAGTTAATTAATACAA
TAACCCCGATACAAAATACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MCRLLGYLGEPILLESILTQPKHSLIVQSYQPQEMQESLLNADGFGLGWYDTQKQTSPFTYKNTQPIWNDINLKSLGGYI
ESGCILGYVRSATLGQGIDISNCQPFNYKNILFIHNGYIDQFRSTLYKPIRDSLQDIPYLLINGNTDSEHIFALLINEVL
EIIKYNFQEALHNILMFLKKIAQENKVKFLANTIITDGHQLVASRFAQEASSPSLYWLKNSSKFPNSVIIASEPLFADDW
QKFPEQSITKVSENLDIQIYQI

Sequences:

>Translated_262_residues
MCRLLGYLGEPILLESILTQPKHSLIVQSYQPQEMQESLLNADGFGLGWYDTQKQTSPFTYKNTQPIWNDINLKSLGGYI
ESGCILGYVRSATLGQGIDISNCQPFNYKNILFIHNGYIDQFRSTLYKPIRDSLQDIPYLLINGNTDSEHIFALLINEVL
EIIKYNFQEALHNILMFLKKIAQENKVKFLANTIITDGHQLVASRFAQEASSPSLYWLKNSSKFPNSVIIASEPLFADDW
QKFPEQSITKVSENLDIQIYQI
>Mature_262_residues
MCRLLGYLGEPILLESILTQPKHSLIVQSYQPQEMQESLLNADGFGLGWYDTQKQTSPFTYKNTQPIWNDINLKSLGGYI
ESGCILGYVRSATLGQGIDISNCQPFNYKNILFIHNGYIDQFRSTLYKPIRDSLQDIPYLLINGNTDSEHIFALLINEVL
EIIKYNFQEALHNILMFLKKIAQENKVKFLANTIITDGHQLVASRFAQEASSPSLYWLKNSSKFPNSVIIASEPLFADDW
QKFPEQSITKVSENLDIQIYQI

Specific function: Unknown

COG id: COG0121

COG function: function code R; Predicted glutamine amidotransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutamine amidotransferase type-2 domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6324138, Length=296, Percent_Identity=29.3918918918919, Blast_Score=117, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017808
- InterPro:   IPR017932 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29953; Mature: 29953

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRLLGYLGEPILLESILTQPKHSLIVQSYQPQEMQESLLNADGFGLGWYDTQKQTSPFT
CCCHHHHCCCHHHHHHHHCCCCHHHEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
YKNTQPIWNDINLKSLGGYIESGCILGYVRSATLGQGIDISNCQPFNYKNILFIHNGYID
CCCCCCCCCCCCHHHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHH
QFRSTLYKPIRDSLQDIPYLLINGNTDSEHIFALLINEVLEIIKYNFQEALHNILMFLKK
HHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAQENKVKFLANTIITDGHQLVASRFAQEASSPSLYWLKNSSKFPNSVIIASEPLFADDW
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCHHHH
QKFPEQSITKVSENLDIQIYQI
HHHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure
MCRLLGYLGEPILLESILTQPKHSLIVQSYQPQEMQESLLNADGFGLGWYDTQKQTSPFT
CCCHHHHCCCHHHHHHHHCCCCHHHEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
YKNTQPIWNDINLKSLGGYIESGCILGYVRSATLGQGIDISNCQPFNYKNILFIHNGYID
CCCCCCCCCCCCHHHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHH
QFRSTLYKPIRDSLQDIPYLLINGNTDSEHIFALLINEVLEIIKYNFQEALHNILMFLKK
HHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAQENKVKFLANTIITDGHQLVASRFAQEASSPSLYWLKNSSKFPNSVIIASEPLFADDW
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCHHHH
QKFPEQSITKVSENLDIQIYQI
HHHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]