Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475853

Identifier: 113475853

GI number: 113475853

Start: 3447381

End: 3447902

Strand: Direct

Name: 113475853

Synonym: Tery_2212

Alternate gene names: NA

Gene position: 3447381-3447902 (Clockwise)

Preceding gene: 113475852

Following gene: 113475854

Centisome position: 44.48

GC content: 36.78

Gene sequence:

>522_bases
TTGTGGCAAGACAACCTAAGTTTAGGAGCTGCTCCTAACTATGCAGTAGCTTTACGAGCAGGTGCTGGTTTTGAAATGAC
GGCAGAAATGGAAGAAAGATTTGAACAAGAACAAGACAATTTGACTAGTCCTAAATTACCTCGTATCAGAAATGTCTATC
GCCTTCAACTAGTTACTGAAGACGATCCACATACTCCTATTGAAGAAAACTTATCTATTAAACTGCCATATCATACTAAA
GGTAAACCAATAATTATTGGTGGTGATGGTAGTGATTATACTGATGTAGACATTTACTTGCCAGGTATTGCTGATAGATG
TGCCTCTTTATCTGTAAATAACCGTGTCGTTGAAATTCAATGTTGGGCTACAGGAAAAGTTCAAATTAATCGAACTTTAA
TGGAAAGAAGGGGAAAAAAGTCACTCCGCCACGGTCAAATTATAACCTTGTTACGAAACGATAAACCAGACAAATATTAC
TGTTTTTGCTTCTATGACACTTTATATGATCCGCAAAGCTAA

Upstream 100 bases:

>100_bases
CAATTGTACTTTATTAGAAGCACCCTGGCTTTATTTAAGTCCTTTTATTCTCCATTATCGTTAAAAGTATGACTCAGATT
AGTATTATTGGTACTAGAGC

Downstream 100 bases:

>100_bases
ACTGTTAGCAATAGCAGTTTTTTCTGCTATATTACCATTCGGTTGTGCCGCCATACCTGAAAATATAATTAGTCAAGATG
ACTGTAGTAATACTAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTEDDPHTPIEENLSIKLPYHTK
GKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQCWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYY
CFCFYDTLYDPQS

Sequences:

>Translated_173_residues
MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTEDDPHTPIEENLSIKLPYHTK
GKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQCWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYY
CFCFYDTLYDPQS
>Mature_173_residues
MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTEDDPHTPIEENLSIKLPYHTK
GKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQCWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYY
CFCFYDTLYDPQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19772; Mature: 19772

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTE
CCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
DDPHTPIEENLSIKLPYHTKGKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQ
CCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHCCCCCCEEEEEE
CWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYYCFCFYDTLYDPQS
EEECCEEEEHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTE
CCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
DDPHTPIEENLSIKLPYHTKGKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQ
CCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHCCCCCCEEEEEE
CWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYYCFCFYDTLYDPQS
EEECCEEEEHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA