Click here to switch to the map view.

The map label for this gene is yqjB [H]

Identifier: 113475771

GI number: 113475771

Start: 3320294

End: 3320944

Strand: Direct

Name: yqjB [H]

Synonym: Tery_2124

Alternate gene names: 113475771

Gene position: 3320294-3320944 (Clockwise)

Preceding gene: 113475770

Following gene: 113475774

Centisome position: 42.84

GC content: 40.4

Gene sequence:

>651_bases
ATGATACAATCTACTACAAATAAATGGCTATATTTTATTCGCAAAATCATCCAGGGAAAATATAATTTAACAGCTATTGT
CCTGACCACAGCAATTATTTTATTTAGTAAAAGCTTCGCTATAGCTTCTACCCCTACTACTGAGACTAGCAATAATAATC
AACAAACACAGATAGATACCAATTTACCATCTGATAGCTTAATGCCCAAATTAGATCAAGCTATCAAAGACTTTCAAAAA
TATTTGGGTATAAAAGCAGAAGAGTTAGTTCGTGTCGTACTCCGCATCGGTGAGAGGCGGGTATATGTATACGAGGGAGA
AAAAGAAGTTGCTAGTTATCCTGTAGCAGTGGGTAAACCAGGTTGGGAAACTCCCAAAGGCAATTTCAAAGTTATTCAAA
TGGTAGAAAATCCTAAATGGCAGAACCCCTGGACGGGTGAGGTAATGCCAGCCGGACCAAATACTGCCCTGGGACTGAGA
TGGATTGGTTTTTGGACAGACGGTAAAGACTCCATTGGCTTTCATGGTACTCCAACTGTAGGATCAATTGGATCTGCGGC
TTCCCACGGTTGCGTGCGGATGTATAATGAGGATGTGATTAAGTTATTTCAGAAAGTACAAGTAGGTACCGAGGTGGTGG
TAGAACCATAG

Upstream 100 bases:

>100_bases
GTAAAGTTTAATTAAAACATTTTTAATATCCGAATTGTATTAAAATATTATCTCACTAGTTTTCAGCTAACTAATTAAGT
GGGATATTTGAGGAGTCAAA

Downstream 100 bases:

>100_bases
TTTATAGGGAATGTAAGGTATTGACTATAATCTGGTATTATCTATCTCTATCTGTAGTTACAGCAGCAGCACCGGAACAA
TGATGTATAAAGTAAGCTTT

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MIQSTTNKWLYFIRKIIQGKYNLTAIVLTTAIILFSKSFAIASTPTTETSNNNQQTQIDTNLPSDSLMPKLDQAIKDFQK
YLGIKAEELVRVVLRIGERRVYVYEGEKEVASYPVAVGKPGWETPKGNFKVIQMVENPKWQNPWTGEVMPAGPNTALGLR
WIGFWTDGKDSIGFHGTPTVGSIGSAASHGCVRMYNEDVIKLFQKVQVGTEVVVEP

Sequences:

>Translated_216_residues
MIQSTTNKWLYFIRKIIQGKYNLTAIVLTTAIILFSKSFAIASTPTTETSNNNQQTQIDTNLPSDSLMPKLDQAIKDFQK
YLGIKAEELVRVVLRIGERRVYVYEGEKEVASYPVAVGKPGWETPKGNFKVIQMVENPKWQNPWTGEVMPAGPNTALGLR
WIGFWTDGKDSIGFHGTPTVGSIGSAASHGCVRMYNEDVIKLFQKVQVGTEVVVEP
>Mature_216_residues
MIQSTTNKWLYFIRKIIQGKYNLTAIVLTTAIILFSKSFAIASTPTTETSNNNQQTQIDTNLPSDSLMPKLDQAIKDFQK
YLGIKAEELVRVVLRIGERRVYVYEGEKEVASYPVAVGKPGWETPKGNFKVIQMVENPKWQNPWTGEVMPAGPNTALGLR
WIGFWTDGKDSIGFHGTPTVGSIGSAASHGCVRMYNEDVIKLFQKVQVGTEVVVEP

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=214, Percent_Identity=29.9065420560748, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787040, Length=137, Percent_Identity=35.7664233576642, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788299, Length=175, Percent_Identity=29.7142857142857, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24069; Mature: 24069

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQSTTNKWLYFIRKIIQGKYNLTAIVLTTAIILFSKSFAIASTPTTETSNNNQQTQIDT
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEC
NLPSDSLMPKLDQAIKDFQKYLGIKAEELVRVVLRIGERRVYVYEGEKEVASYPVAVGKP
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCHHHHHCCEEECCC
GWETPKGNFKVIQMVENPKWQNPWTGEVMPAGPNTALGLRWIGFWTDGKDSIGFHGTPTV
CCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCC
GSIGSAASHGCVRMYNEDVIKLFQKVQVGTEVVVEP
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MIQSTTNKWLYFIRKIIQGKYNLTAIVLTTAIILFSKSFAIASTPTTETSNNNQQTQIDT
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEC
NLPSDSLMPKLDQAIKDFQKYLGIKAEELVRVVLRIGERRVYVYEGEKEVASYPVAVGKP
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCHHHHHCCEEECCC
GWETPKGNFKVIQMVENPKWQNPWTGEVMPAGPNTALGLRWIGFWTDGKDSIGFHGTPTV
CCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCC
GSIGSAASHGCVRMYNEDVIKLFQKVQVGTEVVVEP
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]