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The map label for this gene is yjcF [C]

Identifier: 113475744

GI number: 113475744

Start: 3267818

End: 3268873

Strand: Direct

Name: yjcF [C]

Synonym: Tery_2093

Alternate gene names: 113475744

Gene position: 3267818-3268873 (Clockwise)

Preceding gene: 113475742

Following gene: 113475747

Centisome position: 42.16

GC content: 37.5

Gene sequence:

>1056_bases
ATGAATGCTAGCCAGCTTTTAAGTGCAAATGAACTGTTATTTAGACATTCCCAAGGAGAAAGAAATTTTCAGGGTGCAAA
CCTAATTGCCGTTAATTTAAGTGCAGTCAACCTCAATTGTAGCAATCTAAGTAATGCTAATTTTAAAGATTCATACTTAG
GTAAAACAAAACTAATTGGATCTAATTTAAATGGTGCAGATTTTAGTTATGCTAATCTGTCCGAAGCCAAATTTATAGAA
GCTAATTTGAGTGCTGCTAACTTTACTAAAACCACACTTATTGCAACCGATATAAGTGGAGGAATTTTGAGTGGGGCAAT
TTTCTCAGAAGCTAATTTAACAAGAGCTATTCTCATTGGTACTAGCATGGTTGGAACTTCTTTACTAAATTGCTCAATAT
TAACCAAAGCTAACCTCACAAGAGCTACTCTTTCTCGTGCTATTCTTAGTGGTGCTGACTTAACACAGGCTAACTTGAAT
CGGGCAATTATGACTGAAGTGGACCTAAGTGGCACTTTGCTAAATCAGGCAAGTCTAATTCGAGCCTATCTACAACGGGG
TAATCTCAATGGTGCAAAACTAATCAAGGCAGATTTAACAGAAGCCACTTTAGTACAGGCCAACCTTTGTGCTTCTGATT
TAACTGGAGCAGAGTTGCAAGGTGCAAATCTCAGTTATGCTAATTTAAGTGGGTCAAATTTGATGGGAGCGAATCTACAG
GGAGCAAATCTCAGCAATACTAATCTTAATGGTGTTATTCTCCAACAGGCAGACCTGCAAGCTGCTGACTTGAGCAAAGC
TAGCTTACGAGGTGCTAATTTAAAAGCTGTTAATCTCTCAGGGGCAAATTTATTGAAAGCTGACTTGCGCGATACTAACT
TACAAAAGGCTAATCTTTATGGCGCTGGTTTATTGTTAGTATCTCTCAAAGGCGCCAACTTAAAAGAAGCCTGTTTATGT
AATGCTAACTTAATTGGGTCTAGTTTAAATCTTTCTAGTCTTCAGGATGTTTGCCTAGAAAAAACAATTATGCCTAATGG
TTCAATTCATGAATAG

Upstream 100 bases:

>100_bases
AAGTTTAAGTCAACATGGAACCCTTAGAACTGAATTTTTTGCAGTACCTAAGAAATCAAATATATTAACATAAATTCATA
CCAAATCACAGATTTATTTT

Downstream 100 bases:

>100_bases
AGTTAGAGTCCTTTTCAGGGCTAAATACGGTCAGTGAGCTTCAAAAGCTAGATTTCAAATAAAGTAGTTCTAATTAATTA
GAGTTTGCTAAGTGCGACTT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MNASQLLSANELLFRHSQGERNFQGANLIAVNLSAVNLNCSNLSNANFKDSYLGKTKLIGSNLNGADFSYANLSEAKFIE
ANLSAANFTKTTLIATDISGGILSGAIFSEANLTRAILIGTSMVGTSLLNCSILTKANLTRATLSRAILSGADLTQANLN
RAIMTEVDLSGTLLNQASLIRAYLQRGNLNGAKLIKADLTEATLVQANLCASDLTGAELQGANLSYANLSGSNLMGANLQ
GANLSNTNLNGVILQQADLQAADLSKASLRGANLKAVNLSGANLLKADLRDTNLQKANLYGAGLLLVSLKGANLKEACLC
NANLIGSSLNLSSLQDVCLEKTIMPNGSIHE

Sequences:

>Translated_351_residues
MNASQLLSANELLFRHSQGERNFQGANLIAVNLSAVNLNCSNLSNANFKDSYLGKTKLIGSNLNGADFSYANLSEAKFIE
ANLSAANFTKTTLIATDISGGILSGAIFSEANLTRAILIGTSMVGTSLLNCSILTKANLTRATLSRAILSGADLTQANLN
RAIMTEVDLSGTLLNQASLIRAYLQRGNLNGAKLIKADLTEATLVQANLCASDLTGAELQGANLSYANLSGSNLMGANLQ
GANLSNTNLNGVILQQADLQAADLSKASLRGANLKAVNLSGANLLKADLRDTNLQKANLYGAGLLLVSLKGANLKEACLC
NANLIGSSLNLSSLQDVCLEKTIMPNGSIHE
>Mature_351_residues
MNASQLLSANELLFRHSQGERNFQGANLIAVNLSAVNLNCSNLSNANFKDSYLGKTKLIGSNLNGADFSYANLSEAKFIE
ANLSAANFTKTTLIATDISGGILSGAIFSEANLTRAILIGTSMVGTSLLNCSILTKANLTRATLSRAILSGADLTQANLN
RAIMTEVDLSGTLLNQASLIRAYLQRGNLNGAKLIKADLTEATLVQANLCASDLTGAELQGANLSYANLSGSNLMGANLQ
GANLSNTNLNGVILQQADLQAADLSKASLRGANLKAVNLSGANLLKADLRDTNLQKANLYGAGLLLVSLKGANLKEACLC
NANLIGSSLNLSSLQDVCLEKTIMPNGSIHE

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=185, Percent_Identity=30.8108108108108, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221377802, Length=194, Percent_Identity=35.0515463917526, Blast_Score=82, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 36618; Mature: 36618

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASQLLSANELLFRHSQGERNFQGANLIAVNLSAVNLNCSNLSNANFKDSYLGKTKLIG
CCHHHHCCHHHHHEECCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCHHHCCCEEEEC
SNLNGADFSYANLSEAKFIEANLSAANFTKTTLIATDISGGILSGAIFSEANLTRAILIG
CCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCHHCCEEECCCCCEEEEEEE
TSMVGTSLLNCSILTKANLTRATLSRAILSGADLTQANLNRAIMTEVDLSGTLLNQASLI
CHHHHHHHHCEEEEECCCCHHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCHHHHHHHHH
RAYLQRGNLNGAKLIKADLTEATLVQANLCASDLTGAELQGANLSYANLSGSNLMGANLQ
HHHHHHCCCCCCEEEEECCCHHHEEEHHHHHCCCCCCEECCCCEEEEECCCCCEECCCCC
GANLSNTNLNGVILQQADLQAADLSKASLRGANLKAVNLSGANLLKADLRDTNLQKANLY
CCCCCCCCCCEEEEEECCCCHHCCCHHHCCCCCEEEEECCCCCEEEECCCCCCCEEEEEE
GAGLLLVSLKGANLKEACLCNANLIGSSLNLSSLQDVCLEKTIMPNGSIHE
ECEEEEEEECCCCCCHHEEECCHHCCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNASQLLSANELLFRHSQGERNFQGANLIAVNLSAVNLNCSNLSNANFKDSYLGKTKLIG
CCHHHHCCHHHHHEECCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCHHHCCCEEEEC
SNLNGADFSYANLSEAKFIEANLSAANFTKTTLIATDISGGILSGAIFSEANLTRAILIG
CCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCHHCCEEECCCCCEEEEEEE
TSMVGTSLLNCSILTKANLTRATLSRAILSGADLTQANLNRAIMTEVDLSGTLLNQASLI
CHHHHHHHHCEEEEECCCCHHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCHHHHHHHHH
RAYLQRGNLNGAKLIKADLTEATLVQANLCASDLTGAELQGANLSYANLSGSNLMGANLQ
HHHHHHCCCCCCEEEEECCCHHHEEEHHHHHCCCCCCEECCCCEEEEECCCCCEECCCCC
GANLSNTNLNGVILQQADLQAADLSKASLRGANLKAVNLSGANLLKADLRDTNLQKANLY
CCCCCCCCCCEEEEEECCCCHHCCCHHHCCCCCEEEEECCCCCEEEECCCCCCCEEEEEE
GAGLLLVSLKGANLKEACLCNANLIGSSLNLSSLQDVCLEKTIMPNGSIHE
ECEEEEEEECCCCCCHHEEECCHHCCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]