Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475703

Identifier: 113475703

GI number: 113475703

Start: 3196755

End: 3198029

Strand: Direct

Name: 113475703

Synonym: Tery_2050

Alternate gene names: NA

Gene position: 3196755-3198029 (Clockwise)

Preceding gene: 113475702

Following gene: 113475704

Centisome position: 41.25

GC content: 43.29

Gene sequence:

>1275_bases
ATGAAAAAAGCAATCTTAAAATGTTTCAAGAAAAAAATAATTATAAAGAAATATATCATCAGACTAACAATTTTACTAAC
AATATTAACTTTGGTTAGTTGCAATAAAATACCTTTTCTGAACAAACAACCACCACAACCAGAACAACCAACTTTTATTG
CCAGAAAATCAGGTACTCCTGTAAATCCTTTTGCTTTAAATAGATTAGCAAAAGAAACGGTAGTAGAAATTGTGAGTGAG
GGTTATTTGACTGGAGGTAATAAATATCTTCCTAAAGGTTCGGGAGTAATTATTGGTAGAAAAGATTCTGTTTATTATGT
TCTAACTGCTGATCATATTTCTGATATTGACGATGGACTTTCGGTGTTTATTCGCAGTGAAAAACCAGGGAAATTAGGAG
AAGTATTACCTCTAAAATTTATTAGGCGTTACCCACGGGAAGATTTGGCTGTGGTGACGTTTCTTAGTTTTACTAATTAT
AAGGTGGCGGAGGTTGGAGAGGCGAGTCAGCTAGATGATGATAATCAAGTTTATGTGGCGGGCTGGCCTGGGGCTGAGAA
TAGGCAGGGTTTTCAGTTTACTCCTGCTAAGGTGACCAACCCACAAGTGGGAGATAATTTGACTTATCAACCTACTGAAC
CTAGTGAGAGTTTGTATAAGGGGATGAGTGGGGGAGCGGTTTTGAATGAGGCGGGGCAGTTGGTGGGTATTCATGTGGGC
TTGACGAAGGTTGGTGGAGATGGGAAGGGGGTTTTGATTTCGACTTTTTTGCAGATGGTGCCACCAGAGGTTGAGGAGGT
GTTGGGGAGTTCAACTCCCGATGTCTTGTCTTCTTCGAGTAGTGACAATGAGGAAGTTAAATTACGACGACAACTGGAGG
AGGAGCGGCGGAAGCGTGAAGAGGCAGAAGGGCTAGTGGAAAAGCTAGAGGCTAAACTTTTCAAAGAGACAGAAGGGCGA
AAACAAGAGGGAGAAAAAAAAATAAAAAATGATAAAAAAAGGTTTTGCCTCTGGGGTTATGTTTGGTGGTCGTGGTTCTT
GAAGTTGGGTGTGTGGGGGCTGTATGTCGCTGTCGTCGTCGTAGCGTTTCGTTGGGTCGTAGGGGTGTTTGAGGGGATTT
TGGTCTCCCGGGAGCAGCGTTGGCCTTGGAGAGGGAGGCTTTGGTGGCTGATAGAGTTTGCTTGCTGGGGGGTGGGAGGA
ATTTGGGGAATGGTGGGAGGAATTGGCATGATTTTTGTGTGGGATTGGGCTGATGGGTTGGGGGCGTGTAATTAG

Upstream 100 bases:

>100_bases
AATTTTGAATATGGTTTTTACGATTTACTCTGTACATTATTTGCCCAAAATGTGCTATGTATAATTGTAATTCCTCTGGT
GGTAGTAATATATAATTCTT

Downstream 100 bases:

>100_bases
AAGTCTAACACTAAGTCCTTTCAGCCGTCAAGAAAAAAGTTTGCCAAGTTAATTCGATACCTGGCACCCCGCCGCAAAAA
TTCTTAGTATTTGTAGGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MKKAILKCFKKKIIIKKYIIRLTILLTILTLVSCNKIPFLNKQPPQPEQPTFIARKSGTPVNPFALNRLAKETVVEIVSE
GYLTGGNKYLPKGSGVIIGRKDSVYYVLTADHISDIDDGLSVFIRSEKPGKLGEVLPLKFIRRYPREDLAVVTFLSFTNY
KVAEVGEASQLDDDNQVYVAGWPGAENRQGFQFTPAKVTNPQVGDNLTYQPTEPSESLYKGMSGGAVLNEAGQLVGIHVG
LTKVGGDGKGVLISTFLQMVPPEVEEVLGSSTPDVLSSSSSDNEEVKLRRQLEEERRKREEAEGLVEKLEAKLFKETEGR
KQEGEKKIKNDKKRFCLWGYVWWSWFLKLGVWGLYVAVVVVAFRWVVGVFEGILVSREQRWPWRGRLWWLIEFACWGVGG
IWGMVGGIGMIFVWDWADGLGACN

Sequences:

>Translated_424_residues
MKKAILKCFKKKIIIKKYIIRLTILLTILTLVSCNKIPFLNKQPPQPEQPTFIARKSGTPVNPFALNRLAKETVVEIVSE
GYLTGGNKYLPKGSGVIIGRKDSVYYVLTADHISDIDDGLSVFIRSEKPGKLGEVLPLKFIRRYPREDLAVVTFLSFTNY
KVAEVGEASQLDDDNQVYVAGWPGAENRQGFQFTPAKVTNPQVGDNLTYQPTEPSESLYKGMSGGAVLNEAGQLVGIHVG
LTKVGGDGKGVLISTFLQMVPPEVEEVLGSSTPDVLSSSSSDNEEVKLRRQLEEERRKREEAEGLVEKLEAKLFKETEGR
KQEGEKKIKNDKKRFCLWGYVWWSWFLKLGVWGLYVAVVVVAFRWVVGVFEGILVSREQRWPWRGRLWWLIEFACWGVGG
IWGMVGGIGMIFVWDWADGLGACN
>Mature_424_residues
MKKAILKCFKKKIIIKKYIIRLTILLTILTLVSCNKIPFLNKQPPQPEQPTFIARKSGTPVNPFALNRLAKETVVEIVSE
GYLTGGNKYLPKGSGVIIGRKDSVYYVLTADHISDIDDGLSVFIRSEKPGKLGEVLPLKFIRRYPREDLAVVTFLSFTNY
KVAEVGEASQLDDDNQVYVAGWPGAENRQGFQFTPAKVTNPQVGDNLTYQPTEPSESLYKGMSGGAVLNEAGQLVGIHVG
LTKVGGDGKGVLISTFLQMVPPEVEEVLGSSTPDVLSSSSSDNEEVKLRRQLEEERRKREEAEGLVEKLEAKLFKETEGR
KQEGEKKIKNDKKRFCLWGYVWWSWFLKLGVWGLYVAVVVVAFRWVVGVFEGILVSREQRWPWRGRLWWLIEFACWGVGG
IWGMVGGIGMIFVWDWADGLGACN

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47553; Mature: 47553

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAILKCFKKKIIIKKYIIRLTILLTILTLVSCNKIPFLNKQPPQPEQPTFIARKSGTP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
VNPFALNRLAKETVVEIVSEGYLTGGNKYLPKGSGVIIGRKDSVYYVLTADHISDIDDGL
CCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEECCCCEEEEEECCHHCCCCCCC
SVFIRSEKPGKLGEVLPLKFIRRYPREDLAVVTFLSFTNYKVAEVGEASQLDDDNQVYVA
EEEEECCCCCCCCCHHHHHHHHHCCCCHHHEEEEEHHCCEEHHHCCCCCCCCCCCEEEEE
GWPGAENRQGFQFTPAKVTNPQVGDNLTYQPTEPSESLYKGMSGGAVLNEAGQLVGIHVG
ECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCEEEEEEE
LTKVGGDGKGVLISTFLQMVPPEVEEVLGSSTPDVLSSSSSDNEEVKLRRQLEEERRKRE
EEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
EAEGLVEKLEAKLFKETEGRKQEGEKKIKNDKKRFCLWGYVWWSWFLKLGVWGLYVAVVV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH
VAFRWVVGVFEGILVSREQRWPWRGRLWWLIEFACWGVGGIWGMVGGIGMIFVWDWADGL
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
GACN
CCCC
>Mature Secondary Structure
MKKAILKCFKKKIIIKKYIIRLTILLTILTLVSCNKIPFLNKQPPQPEQPTFIARKSGTP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
VNPFALNRLAKETVVEIVSEGYLTGGNKYLPKGSGVIIGRKDSVYYVLTADHISDIDDGL
CCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEECCCCEEEEEECCHHCCCCCCC
SVFIRSEKPGKLGEVLPLKFIRRYPREDLAVVTFLSFTNYKVAEVGEASQLDDDNQVYVA
EEEEECCCCCCCCCHHHHHHHHHCCCCHHHEEEEEHHCCEEHHHCCCCCCCCCCCEEEEE
GWPGAENRQGFQFTPAKVTNPQVGDNLTYQPTEPSESLYKGMSGGAVLNEAGQLVGIHVG
ECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCEEEEEEE
LTKVGGDGKGVLISTFLQMVPPEVEEVLGSSTPDVLSSSSSDNEEVKLRRQLEEERRKRE
EEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
EAEGLVEKLEAKLFKETEGRKQEGEKKIKNDKKRFCLWGYVWWSWFLKLGVWGLYVAVVV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH
VAFRWVVGVFEGILVSREQRWPWRGRLWWLIEFACWGVGGIWGMVGGIGMIFVWDWADGL
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
GACN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA