| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475701
Identifier: 113475701
GI number: 113475701
Start: 3194858
End: 3195511
Strand: Direct
Name: 113475701
Synonym: Tery_2048
Alternate gene names: NA
Gene position: 3194858-3195511 (Clockwise)
Preceding gene: 113475700
Following gene: 113475702
Centisome position: 41.22
GC content: 36.24
Gene sequence:
>654_bases ATGAATTTTAAATTCATCAAACAATGGTTGACTATTGGTTGCTTTAGTTTAGCTGTAATTTCTGGCCTAACTCAGCATAC TCAGGCACAACAAAGTCGACGTAGGGCTAGTTTTTTCTGTGGTACTGAAGGGGGTCAACCTGCTACTATTGCGCGACTGC CAGAGAAGGATGGCAATACTCCTTTAAAAACTTTAATTATTTGGAAAATTGATGACTTTAAAGGGTATCCTCCTGAAAAA CGTTGTCGTCTCGTTTCTCAGAAATTTCAAGATAATCAAAATACGGGTCATTTGAACTATATTGTTTCTGGTCAAGCAAA TGGTTGGCCAGTATTATGTGCTTCTAAACAGAACTATGATTATATTGTAGATTGTCCTGACCCTAATGTTTTGATGACTC TTTTACCGGGGGATGACTCCCAAGACATGATTAGAAAACTGGAAAAACTAAACAGGGGTCGTTCAAATGCACCCCTGGAA CATTTACCAGATGAAGTATTAGTTCGTAGTGGAAATTTAGACTCAATTAATATTAATAAATGGATAAATAATTCTCCACT ACATGGGAATAACTCCCAAGAAATTATCAGAAAAGTTGAAGAACCAAAGACTGATATTGAAGAATCTAATCAATGTATTT GGGGATGCGAATAA
Upstream 100 bases:
>100_bases TAGTATATAAAAATTGTATATAATTTTATGTGGCTGTGTAAGTTCTGCATGAATTTTTGAATATAATTACTATGTTCTTA TTAGCAAAGGAGCAGCATAT
Downstream 100 bases:
>100_bases TTATTCTTTGTAGTTGGGCTTTAGCTCCTCAAATATTAACTTTTGAACTGAAGCTTAACTACAAGCCTAATGCTCTGAAA AATTCTCCAAATATTTGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MNFKFIKQWLTIGCFSLAVISGLTQHTQAQQSRRRASFFCGTEGGQPATIARLPEKDGNTPLKTLIIWKIDDFKGYPPEK RCRLVSQKFQDNQNTGHLNYIVSGQANGWPVLCASKQNYDYIVDCPDPNVLMTLLPGDDSQDMIRKLEKLNRGRSNAPLE HLPDEVLVRSGNLDSININKWINNSPLHGNNSQEIIRKVEEPKTDIEESNQCIWGCE
Sequences:
>Translated_217_residues MNFKFIKQWLTIGCFSLAVISGLTQHTQAQQSRRRASFFCGTEGGQPATIARLPEKDGNTPLKTLIIWKIDDFKGYPPEK RCRLVSQKFQDNQNTGHLNYIVSGQANGWPVLCASKQNYDYIVDCPDPNVLMTLLPGDDSQDMIRKLEKLNRGRSNAPLE HLPDEVLVRSGNLDSININKWINNSPLHGNNSQEIIRKVEEPKTDIEESNQCIWGCE >Mature_217_residues MNFKFIKQWLTIGCFSLAVISGLTQHTQAQQSRRRASFFCGTEGGQPATIARLPEKDGNTPLKTLIIWKIDDFKGYPPEK RCRLVSQKFQDNQNTGHLNYIVSGQANGWPVLCASKQNYDYIVDCPDPNVLMTLLPGDDSQDMIRKLEKLNRGRSNAPLE HLPDEVLVRSGNLDSININKWINNSPLHGNNSQEIIRKVEEPKTDIEESNQCIWGCE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24585; Mature: 24585
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFKFIKQWLTIGCFSLAVISGLTQHTQAQQSRRRASFFCGTEGGQPATIARLPEKDGNT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEECCCCCCCC PLKTLIIWKIDDFKGYPPEKRCRLVSQKFQDNQNTGHLNYIVSGQANGWPVLCASKQNYD CEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCCC YIVDCPDPNVLMTLLPGDDSQDMIRKLEKLNRGRSNAPLEHLPDEVLVRSGNLDSININK EEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHEEECCCCCEEECCC WINNSPLHGNNSQEIIRKVEEPKTDIEESNQCIWGCE CCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCEEECCC >Mature Secondary Structure MNFKFIKQWLTIGCFSLAVISGLTQHTQAQQSRRRASFFCGTEGGQPATIARLPEKDGNT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEECCCCCCCC PLKTLIIWKIDDFKGYPPEKRCRLVSQKFQDNQNTGHLNYIVSGQANGWPVLCASKQNYD CEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCCC YIVDCPDPNVLMTLLPGDDSQDMIRKLEKLNRGRSNAPLEHLPDEVLVRSGNLDSININK EEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHEEECCCCCEEECCC WINNSPLHGNNSQEIIRKVEEPKTDIEESNQCIWGCE CCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA