Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475612

Identifier: 113475612

GI number: 113475612

Start: 3016554

End: 3017336

Strand: Direct

Name: 113475612

Synonym: Tery_1946

Alternate gene names: NA

Gene position: 3016554-3017336 (Clockwise)

Preceding gene: 113475611

Following gene: 113475616

Centisome position: 38.92

GC content: 36.65

Gene sequence:

>783_bases
ATGAAACGATACTTACAAGTACTAAAATTATTTTGGAGTGCAGCTATTGCGGCTGAATTAGAATACCGTTTCAACTTTAT
GATCGCAGCCATTAGCAGCATAGGAGGTTTACTAGGTAGCTTATTTAGTTTACTTCTATTCTATAGAACAGGCTACAAAT
TTCAAGGTTGGAATTGGGAAGAATCTTTAATTATCCTAGCAATTTTTACCATTTTACAGGGTCTTTCAGCAACTTTTTTG
ATTCCTAGTTTAAACCGAATTGTGAAGCAGGTACAAGAAGGTACCCTAGATTTTGTCCTTCTCAAACCCATTAGTAGTCA
ATTTTTGCTTTCTACTCGCACAATTTCTCCCTGGGGAATACTAGACATAATTTTTGGCGGGTTCCTCTTAGAATATGCCG
GTAGTAAACTTGGTTTAGGAATAAGCAATTATTTGCTTACCATACTTCCAATGGTCTGTGGGATAATTATTCTTTATAGT
ATCTGGTTTATCCTGGGCTCTACCAGTATTTGGTTTGTCAAAATTTATAACTTAACAGAAGTCCTCAGAGGTTTATTAGG
AGCAGGAAGATATCCAATAGTAGCTTACCCTACTGCTTATCGTTTCTTCTTCACTTTTCTAGTACCAGTGGCATTTTTAA
CTACTGTACCAGCTCAAACCATATTAGGTAAGGCTGGAAGTACTTGGATATTGGGTTCTTTTGTTTTAGCAGGCGGATTA
TTTTTTGCCTCTATTCAATTTTGGCGACTCGCTCTGCGCTATTATACAAGTGCTTCTAGTTAA

Upstream 100 bases:

>100_bases
AATAGTAGGGGGAATTTATGAATTCCTCTTACAGACAGAAGTAAGATAGAATTGGGTTCAATTTACTTGCTGCTATTATT
TTACTTTCAATTAAGTCACA

Downstream 100 bases:

>100_bases
AGGAAGAAATAAAAAGGAAGAAAGAAGTTTAATTTCAAAGTTGATAAGATAGGAAGACTTTTCCTCCTAATGACGAATAG
TTAGGGGAAATTAAGACCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKRYLQVLKLFWSAAIAAELEYRFNFMIAAISSIGGLLGSLFSLLLFYRTGYKFQGWNWEESLIILAIFTILQGLSATFL
IPSLNRIVKQVQEGTLDFVLLKPISSQFLLSTRTISPWGILDIIFGGFLLEYAGSKLGLGISNYLLTILPMVCGIIILYS
IWFILGSTSIWFVKIYNLTEVLRGLLGAGRYPIVAYPTAYRFFFTFLVPVAFLTTVPAQTILGKAGSTWILGSFVLAGGL
FFASIQFWRLALRYYTSASS

Sequences:

>Translated_260_residues
MKRYLQVLKLFWSAAIAAELEYRFNFMIAAISSIGGLLGSLFSLLLFYRTGYKFQGWNWEESLIILAIFTILQGLSATFL
IPSLNRIVKQVQEGTLDFVLLKPISSQFLLSTRTISPWGILDIIFGGFLLEYAGSKLGLGISNYLLTILPMVCGIIILYS
IWFILGSTSIWFVKIYNLTEVLRGLLGAGRYPIVAYPTAYRFFFTFLVPVAFLTTVPAQTILGKAGSTWILGSFVLAGGL
FFASIQFWRLALRYYTSASS
>Mature_260_residues
MKRYLQVLKLFWSAAIAAELEYRFNFMIAAISSIGGLLGSLFSLLLFYRTGYKFQGWNWEESLIILAIFTILQGLSATFL
IPSLNRIVKQVQEGTLDFVLLKPISSQFLLSTRTISPWGILDIIFGGFLLEYAGSKLGLGISNYLLTILPMVCGIIILYS
IWFILGSTSIWFVKIYNLTEVLRGLLGAGRYPIVAYPTAYRFFFTFLVPVAFLTTVPAQTILGKAGSTWILGSFVLAGGL
FFASIQFWRLALRYYTSASS

Specific function: Unknown

COG id: COG3694

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29112; Mature: 29112

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYLQVLKLFWSAAIAAELEYRFNFMIAAISSIGGLLGSLFSLLLFYRTGYKFQGWNWE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
ESLIILAIFTILQGLSATFLIPSLNRIVKQVQEGTLDFVLLKPISSQFLLSTRTISPWGI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCCCCHHH
LDIIFGGFLLEYAGSKLGLGISNYLLTILPMVCGIIILYSIWFILGSTSIWFVKIYNLTE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
VLRGLLGAGRYPIVAYPTAYRFFFTFLVPVAFLTTVPAQTILGKAGSTWILGSFVLAGGL
HHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHH
FFASIQFWRLALRYYTSASS
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRYLQVLKLFWSAAIAAELEYRFNFMIAAISSIGGLLGSLFSLLLFYRTGYKFQGWNWE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
ESLIILAIFTILQGLSATFLIPSLNRIVKQVQEGTLDFVLLKPISSQFLLSTRTISPWGI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCCCCHHH
LDIIFGGFLLEYAGSKLGLGISNYLLTILPMVCGIIILYSIWFILGSTSIWFVKIYNLTE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
VLRGLLGAGRYPIVAYPTAYRFFFTFLVPVAFLTTVPAQTILGKAGSTWILGSFVLAGGL
HHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHH
FFASIQFWRLALRYYTSASS
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA