Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475601

Identifier: 113475601

GI number: 113475601

Start: 3000891

End: 3001781

Strand: Direct

Name: 113475601

Synonym: Tery_1934

Alternate gene names: NA

Gene position: 3000891-3001781 (Clockwise)

Preceding gene: 113475600

Following gene: 113475602

Centisome position: 38.72

GC content: 39.06

Gene sequence:

>891_bases
ATGGATAGTATTTTTATTCAAATAGTTGCTTACCGGGATTTAGAATTAGTTCCCACAGTTGAAGAGGCGATCGCTCATGC
TACTCATCCCAAGCGTCTCACTTTTGGTATTTGTTGGCAGTATGGTACGGATGAGGAAAAAGATTATATTAGTAAACTTA
AAGCTATAAAAAATTGTCGTATTATTACAGTTACAGCTTCTCAAGCTCGCGGTGTAGGTTGGGCGAGGTCTCTGGTGCAA
AAGTTATGGCAAAAAGAACAATATACTCTACAAATTGATGCCCATATGAGATTTTTACCTGGATGGGATGTGAAATTAAT
TAAAATGCTGAAAGCCTGTCCTAGTGAAAAACCGCTTTTAAGTGCTTATCCTCCTGCTTACAGACCCCCTAGAGAATTGC
TTGGAGATACACCGAGTCGCTTAGAGCCAAGCCAGTTTGGAGATCCTGGTACTTTAACTTTAAAAGCAATAGGAGATTTG
AGTAAATGCAGTACTCCGCAACTAGGAGCTTTTGTTGCTGCTGGATTTATTTTTGCAGAAGGGTCAATTATTGAAGAGGT
GCCCTACGACCCGGATATTTATTTTACTGGAGAAGAGGTGTTATTTGCTGCTAAAGCTTGGACGAAGGGGTGGGATATTT
ATCATCCTAATTTGAGTGTTTGTTGGCATTTTTATAATACTGGTAAAAAGCGGGTTGTGCATTGGGAAGATCATCAACAT
TGGTGGGTCCAAAATAAGGTATCTGAATCTCGTTTTCGTCAGATTTTGGGAATGGAAACTGCAAAGGAGGATTTTGGAAT
TTATGGATTAGGAAATGTCAGAAGTTTGGCAGAGTATGAAGCATTTGCCGGTGTAAATTTTCAGGAACGTTGGTTTATTC
ATTTTATTTAG

Upstream 100 bases:

>100_bases
CGATTTAGATAAACTTAATAGTATGGTCAATTGTAAGACTACGGATGTTTATTAAAATAGGTAATTTGAGAGCTAGATTA
AATAACTCAAGACATATTTT

Downstream 100 bases:

>100_bases
GGAAGTTAGAAGTTAAAAGTTAGAAGGAGGTTAATTAACTACAAGTGTGATAATTTTTTCTTATTAACTTTTTTACATTA
GGTTTCTTCATAAAAGGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCRIITVTASQARGVGWARSLVQ
KLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLLSAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDL
SKCSTPQLGAFVAAGFIFAEGSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH
WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI

Sequences:

>Translated_296_residues
MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCRIITVTASQARGVGWARSLVQ
KLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLLSAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDL
SKCSTPQLGAFVAAGFIFAEGSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH
WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI
>Mature_296_residues
MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCRIITVTASQARGVGWARSLVQ
KLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLLSAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDL
SKCSTPQLGAFVAAGFIFAEGSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH
WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33950; Mature: 33950

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCR
CCCEEEEEEEECCCEECCCHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCE
IITVTASQARGVGWARSLVQKLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLL
EEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECEEEECCCCCHHHHHHHHHCCCCCCCC
SAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDLSKCSTPQLGAFVAAGFIFAE
CCCCCCCCCHHHHHCCCCCCCCCHHCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHEEC
GSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH
CCCCCCCCCCCCEEECCHHEEEEEHHHCCCCEEECCCCEEEEEEECCCCEEEEEEECCCE
WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI
EEEHHHHHHHHHHHHHCCCHHHHCCCEEECCCHHHHHHHHHHCCCCCCCEEEEEEC
>Mature Secondary Structure
MDSIFIQIVAYRDLELVPTVEEAIAHATHPKRLTFGICWQYGTDEEKDYISKLKAIKNCR
CCCEEEEEEEECCCEECCCHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCE
IITVTASQARGVGWARSLVQKLWQKEQYTLQIDAHMRFLPGWDVKLIKMLKACPSEKPLL
EEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECEEEECCCCCHHHHHHHHHCCCCCCCC
SAYPPAYRPPRELLGDTPSRLEPSQFGDPGTLTLKAIGDLSKCSTPQLGAFVAAGFIFAE
CCCCCCCCCHHHHHCCCCCCCCCHHCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHEEC
GSIIEEVPYDPDIYFTGEEVLFAAKAWTKGWDIYHPNLSVCWHFYNTGKKRVVHWEDHQH
CCCCCCCCCCCCEEECCHHEEEEEHHHCCCCEEECCCCEEEEEEECCCCEEEEEEECCCE
WWVQNKVSESRFRQILGMETAKEDFGIYGLGNVRSLAEYEAFAGVNFQERWFIHFI
EEEHHHHHHHHHHHHHCCCHHHHCCCEEECCCHHHHHHHHHHCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA