| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475578
Identifier: 113475578
GI number: 113475578
Start: 2959029
End: 2959595
Strand: Direct
Name: 113475578
Synonym: Tery_1911
Alternate gene names: NA
Gene position: 2959029-2959595 (Clockwise)
Preceding gene: 113475574
Following gene: 113475579
Centisome position: 38.18
GC content: 37.21
Gene sequence:
>567_bases ATGTCAAATTCATTAGACTCCCCTTCTTCCTTACCACCTGCAGTCGAACAAGTAGCCAAAGCTCTGCGACTAGGTGGATG GATTTGTTTTTGGGTACAACTTGTCCTCGGTATGGTTTCAGGTATAATTTTTATTTTTGCTGTAGGTTTACTAAGCCAGA ATACTGGAGCTGGCACAGGAGGTGGACTATTTTTTGCAGTTTGTAGTCTTGTGGTACTAGGATTCAGTATTTTCTTGTCA TTTCGGTATACCCGCTTAGCAAGGCAATTGCGATCACAAATATCTTCTTTAAGGCCAAGCAGGGCAGATACAACTCAAAA AGTAAAAAGGACTTTAATTATTAACTTAGTTGGGATGAGTCTAGCTTTATTAGGAGGAGAAGCAATTGGAGGTATTTTAT TAGGCAAATCCTTAGTGAGTAAGTCATTTGTATTTAACCCTACAGAACTAGAAAAATTTACACTAGATATTTTTATACTC TTGGGTAATACTCACATAATTGTAGCTCATTTTATTGGGATTATAGTAGGGCTATTTTTGCTTGATAGGGTTTACAACAA GCAGTGA
Upstream 100 bases:
>100_bases TAAAAGGAGTCGACCCAGTGTCAATATCTCTGTGCAAAAATTTTAGCGAGAGAGTCGAGAAGCTCCACAATTAAAGTTTT CACCGAAAAATTTGGTAAGT
Downstream 100 bases:
>100_bases AGTTGACAATAGTTTTCTATTTTGGATATCCTCAAAACTATCTTGAAAGCCTACGATAATATGAATATTTTTTTTAGTGA TTGATTGCCTCAGTAGTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSNSLDSPSSLPPAVEQVAKALRLGGWICFWVQLVLGMVSGIIFIFAVGLLSQNTGAGTGGGLFFAVCSLVVLGFSIFLS FRYTRLARQLRSQISSLRPSRADTTQKVKRTLIINLVGMSLALLGGEAIGGILLGKSLVSKSFVFNPTELEKFTLDIFIL LGNTHIIVAHFIGIIVGLFLLDRVYNKQ
Sequences:
>Translated_188_residues MSNSLDSPSSLPPAVEQVAKALRLGGWICFWVQLVLGMVSGIIFIFAVGLLSQNTGAGTGGGLFFAVCSLVVLGFSIFLS FRYTRLARQLRSQISSLRPSRADTTQKVKRTLIINLVGMSLALLGGEAIGGILLGKSLVSKSFVFNPTELEKFTLDIFIL LGNTHIIVAHFIGIIVGLFLLDRVYNKQ >Mature_187_residues SNSLDSPSSLPPAVEQVAKALRLGGWICFWVQLVLGMVSGIIFIFAVGLLSQNTGAGTGGGLFFAVCSLVVLGFSIFLSF RYTRLARQLRSQISSLRPSRADTTQKVKRTLIINLVGMSLALLGGEAIGGILLGKSLVSKSFVFNPTELEKFTLDIFILL GNTHIIVAHFIGIIVGLFLLDRVYNKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20303; Mature: 20172
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSLDSPSSLPPAVEQVAKALRLGGWICFWVQLVLGMVSGIIFIFAVGLLSQNTGAGTG CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GGLFFAVCSLVVLGFSIFLSFRYTRLARQLRSQISSLRPSRADTTQKVKRTLIINLVGMS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH LALLGGEAIGGILLGKSLVSKSFVFNPTELEKFTLDIFILLGNTHIIVAHFIGIIVGLFL HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHH LDRVYNKQ HHHHHCCC >Mature Secondary Structure SNSLDSPSSLPPAVEQVAKALRLGGWICFWVQLVLGMVSGIIFIFAVGLLSQNTGAGTG CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GGLFFAVCSLVVLGFSIFLSFRYTRLARQLRSQISSLRPSRADTTQKVKRTLIINLVGMS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH LALLGGEAIGGILLGKSLVSKSFVFNPTELEKFTLDIFILLGNTHIIVAHFIGIIVGLFL HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHH LDRVYNKQ HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA