Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475565

Identifier: 113475565

GI number: 113475565

Start: 2921966

End: 2923147

Strand: Direct

Name: 113475565

Synonym: Tery_1898

Alternate gene names: NA

Gene position: 2921966-2923147 (Clockwise)

Preceding gene: 113475564

Following gene: 113475566

Centisome position: 37.7

GC content: 36.29

Gene sequence:

>1182_bases
ATGGTTCAAGAACAACAACGGCAAAAAAACACAAGAATTAAACTGGGAATTTGGGGAACTAGCAGTGCAGGAAAAACAGT
TTATATGCTCATGCTATATCATTACCTTCAAAGGTCAAAAAGAAAAGACAGGTTCTTAGTTAAGGCTGGTAATGAACAAA
CAGACAAGTTTCTGAAAAAACATTTAATTTCAAGGATTTATAAAGGAGAATTTCCAAGCACAACAACAAAGGAAGATAAA
TATAACTCATATTCTTATAAGCTGAAAAGGAATAATAGCGACACAATAGTAGAGTTGACCTTTCTCGATCTCTCAGGAGA
AATCTGGAAAAGCAGAGGATACAAGGTAAAGACAAATAACAAGAAAAACGAGGATGTAAGTGTAGCAAAATACTTGACAC
AGTGCCATGGAATTTTAATTTTATTGAGTCCCTTAAAGGAAGACTACCCTCCTAAAAACTCATATTTCTCATTATTAGAA
GGCTTATTTAGATTAATGCTAAGAGAAATTCCCGAATCCGAATTCAAACTAGAGCAATATGTTGTTTTTGGTATAACTAA
AGCAGATCACGATGAAATTTACCAGCGGACAATAGACAGGAATTTTTATCAATTGATTATGGAAATTATAGGACCCCAAG
CAAGCCTAGAAGGGCTCGAAAGCTATTTTCATCTAGAAATAGTGGAAGAGAAAGATGGAACAAAGCGAGTGAATGTAAAT
GGAGAAAATAATCGTTGCTGTTTTCTTCCTATTTCACCCTTCGCAAAATATTACGATGAAGATGGTGGTAAAATGATATC
CCCTGTTATTGAAAATAAAACAGAGGAAGAACCAAGGGCAAATGAGTCACAGCAGGAGCCGCCAAAAGCTGCTGGTAAGC
GACAGGAGAAACAGCGAGAAGACCCTTTTAAAAAAAATCTAGGTAAGAAGCAAAAGAATAATGATGATTATGAAACACCC
AGTACGGCTGACAATTCTGAAGGTGGTCAAAGGGAAGGCCACAGTAGTGACAATGATGACTATGACACACCCAGTACAAC
TAATGATGATGAACCAAATCAAAAACAGGGAAAATACAAGATTGATACACGCGTTGAGTGGAGACCTCAAAATGTAGTTG
AGCCTATTGAGTGGTTGATTCAGCGTATAGAAAATCATCCTCCCAAAATTTTTGATGAATAG

Upstream 100 bases:

>100_bases
TGCTCAATAAAAATCAAAAAATGTTAGCTATTCGTTGTTCAGAGAGGATTGCTATATTAACTTGTAGTTAGTCAACCAAA
CACAGGGGTTATTTATAATC

Downstream 100 bases:

>100_bases
CAACAAACAGAGTAACAACAGTTAATCAATTAGGAGAAAAAATTATGCAACAACAGCAAGAACTAGAGCAGTTTATTTAC
GGTAAATTTGTCGGTCCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MVQEQQRQKNTRIKLGIWGTSSAGKTVYMLMLYHYLQRSKRKDRFLVKAGNEQTDKFLKKHLISRIYKGEFPSTTTKEDK
YNSYSYKLKRNNSDTIVELTFLDLSGEIWKSRGYKVKTNNKKNEDVSVAKYLTQCHGILILLSPLKEDYPPKNSYFSLLE
GLFRLMLREIPESEFKLEQYVVFGITKADHDEIYQRTIDRNFYQLIMEIIGPQASLEGLESYFHLEIVEEKDGTKRVNVN
GENNRCCFLPISPFAKYYDEDGGKMISPVIENKTEEEPRANESQQEPPKAAGKRQEKQREDPFKKNLGKKQKNNDDYETP
STADNSEGGQREGHSSDNDDYDTPSTTNDDEPNQKQGKYKIDTRVEWRPQNVVEPIEWLIQRIENHPPKIFDE

Sequences:

>Translated_393_residues
MVQEQQRQKNTRIKLGIWGTSSAGKTVYMLMLYHYLQRSKRKDRFLVKAGNEQTDKFLKKHLISRIYKGEFPSTTTKEDK
YNSYSYKLKRNNSDTIVELTFLDLSGEIWKSRGYKVKTNNKKNEDVSVAKYLTQCHGILILLSPLKEDYPPKNSYFSLLE
GLFRLMLREIPESEFKLEQYVVFGITKADHDEIYQRTIDRNFYQLIMEIIGPQASLEGLESYFHLEIVEEKDGTKRVNVN
GENNRCCFLPISPFAKYYDEDGGKMISPVIENKTEEEPRANESQQEPPKAAGKRQEKQREDPFKKNLGKKQKNNDDYETP
STADNSEGGQREGHSSDNDDYDTPSTTNDDEPNQKQGKYKIDTRVEWRPQNVVEPIEWLIQRIENHPPKIFDE
>Mature_393_residues
MVQEQQRQKNTRIKLGIWGTSSAGKTVYMLMLYHYLQRSKRKDRFLVKAGNEQTDKFLKKHLISRIYKGEFPSTTTKEDK
YNSYSYKLKRNNSDTIVELTFLDLSGEIWKSRGYKVKTNNKKNEDVSVAKYLTQCHGILILLSPLKEDYPPKNSYFSLLE
GLFRLMLREIPESEFKLEQYVVFGITKADHDEIYQRTIDRNFYQLIMEIIGPQASLEGLESYFHLEIVEEKDGTKRVNVN
GENNRCCFLPISPFAKYYDEDGGKMISPVIENKTEEEPRANESQQEPPKAAGKRQEKQREDPFKKNLGKKQKNNDDYETP
STADNSEGGQREGHSSDNDDYDTPSTTNDDEPNQKQGKYKIDTRVEWRPQNVVEPIEWLIQRIENHPPKIFDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45927; Mature: 45927

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQEQQRQKNTRIKLGIWGTSSAGKTVYMLMLYHYLQRSKRKDRFLVKAGNEQTDKFLKK
CCCHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
HLISRIYKGEFPSTTTKEDKYNSYSYKLKRNNSDTIVELTFLDLSGEIWKSRGYKVKTNN
HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCHHHHCCCEEEECCC
KKNEDVSVAKYLTQCHGILILLSPLKEDYPPKNSYFSLLEGLFRLMLREIPESEFKLEQY
CCCCHHHHHHHHHHHHCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHEEE
VVFGITKADHDEIYQRTIDRNFYQLIMEIIGPQASLEGLESYFHLEIVEEKDGTKRVNVN
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEECCCCCEEEEEC
GENNRCCFLPISPFAKYYDEDGGKMISPVIENKTEEEPRANESQQEPPKAAGKRQEKQRE
CCCCCEEEEECCHHHHHHHCCCCEEEHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
DPFKKNLGKKQKNNDDYETPSTADNSEGGQREGHSSDNDDYDTPSTTNDDEPNQKQGKYK
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
IDTRVEWRPQNVVEPIEWLIQRIENHPPKIFDE
ECCEEEECCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVQEQQRQKNTRIKLGIWGTSSAGKTVYMLMLYHYLQRSKRKDRFLVKAGNEQTDKFLKK
CCCHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
HLISRIYKGEFPSTTTKEDKYNSYSYKLKRNNSDTIVELTFLDLSGEIWKSRGYKVKTNN
HHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCHHHHCCCEEEECCC
KKNEDVSVAKYLTQCHGILILLSPLKEDYPPKNSYFSLLEGLFRLMLREIPESEFKLEQY
CCCCHHHHHHHHHHHHCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHEEE
VVFGITKADHDEIYQRTIDRNFYQLIMEIIGPQASLEGLESYFHLEIVEEKDGTKRVNVN
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEECCCCCEEEEEC
GENNRCCFLPISPFAKYYDEDGGKMISPVIENKTEEEPRANESQQEPPKAAGKRQEKQRE
CCCCCEEEEECCHHHHHHHCCCCEEEHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
DPFKKNLGKKQKNNDDYETPSTADNSEGGQREGHSSDNDDYDTPSTTNDDEPNQKQGKYK
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
IDTRVEWRPQNVVEPIEWLIQRIENHPPKIFDE
ECCEEEECCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA