| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475554
Identifier: 113475554
GI number: 113475554
Start: 2883903
End: 2884400
Strand: Direct
Name: 113475554
Synonym: Tery_1886
Alternate gene names: NA
Gene position: 2883903-2884400 (Clockwise)
Preceding gene: 113475553
Following gene: 113475555
Centisome position: 37.21
GC content: 33.33
Gene sequence:
>498_bases ATGCCTGCAAAAGATTTTCTCAGTTCAATTCAAAAGAAAAGATTGCAGAAAGCTTTGCGAGAGAGCGGTTGCTGTCATTT CCGAGAAAGAGTATTGATGTTACTCCTATTAAATGACGGAAAAACTTATTCCGAGATTTCTGAATTTATCGGTTGTTCTT ATAGAACAGTTGCTTATTGGTGTGTACATGGAGACCCAGATAAATTAGATAGTTTACGAGATCAGCGAGAACATGGTAAT TTTCGTAAAGCGACAGAAGAATATATTCAGTTATTAATAGAAGTTACAAAAAAATCTCCTAACCAATTAGGTTATGAATG TAGTAACTGGAGTGGAGAACGTTTAGCAAATTATCTTGCTCAACAAACAGGAATTAAACTTAGTGGTACTCAAGTCAGAA GAATTCTCAAACAAAAAAATATTAGCCTTCCCAAAAGTAGAGTACAACTTTATGAGCGAAAAAATAATAGAAAAAATGTT AGTCGTCCATCTAAATAA
Upstream 100 bases:
>100_bases TTAAAGTTTCATCTCTTAATTTACTAACGCCACAATTTATCCTAGAAACTGGTCGCGTGTGTGGTTAAGTCCTATAAGTG GTTAAAAGAAGGTAGCTGTT
Downstream 100 bases:
>100_bases TTAAGATATATAGTGTAAATATTGATAAATATATCTTTAAATTTATGATTTAAGCATTGTTTCTTTGCTTTTTTTATTTT TAATTAGTACATAAATTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MPAKDFLSSIQKKRLQKALRESGCCHFRERVLMLLLLNDGKTYSEISEFIGCSYRTVAYWCVHGDPDKLDSLRDQREHGN FRKATEEYIQLLIEVTKKSPNQLGYECSNWSGERLANYLAQQTGIKLSGTQVRRILKQKNISLPKSRVQLYERKNNRKNV SRPSK
Sequences:
>Translated_165_residues MPAKDFLSSIQKKRLQKALRESGCCHFRERVLMLLLLNDGKTYSEISEFIGCSYRTVAYWCVHGDPDKLDSLRDQREHGN FRKATEEYIQLLIEVTKKSPNQLGYECSNWSGERLANYLAQQTGIKLSGTQVRRILKQKNISLPKSRVQLYERKNNRKNV SRPSK >Mature_164_residues PAKDFLSSIQKKRLQKALRESGCCHFRERVLMLLLLNDGKTYSEISEFIGCSYRTVAYWCVHGDPDKLDSLRDQREHGNF RKATEEYIQLLIEVTKKSPNQLGYECSNWSGERLANYLAQQTGIKLSGTQVRRILKQKNISLPKSRVQLYERKNNRKNVS RPSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19211; Mature: 19080
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAKDFLSSIQKKRLQKALRESGCCHFRERVLMLLLLNDGKTYSEISEFIGCSYRTVAYW CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHEEE CVHGDPDKLDSLRDQREHGNFRKATEEYIQLLIEVTKKSPNQLGYECSNWSGERLANYLA EECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHH QQTGIKLSGTQVRRILKQKNISLPKSRVQLYERKNNRKNVSRPSK HHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PAKDFLSSIQKKRLQKALRESGCCHFRERVLMLLLLNDGKTYSEISEFIGCSYRTVAYW CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHEEE CVHGDPDKLDSLRDQREHGNFRKATEEYIQLLIEVTKKSPNQLGYECSNWSGERLANYLA EECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHH QQTGIKLSGTQVRRILKQKNISLPKSRVQLYERKNNRKNVSRPSK HHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA