| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475543
Identifier: 113475543
GI number: 113475543
Start: 2870485
End: 2870898
Strand: Direct
Name: 113475543
Synonym: Tery_1875
Alternate gene names: NA
Gene position: 2870485-2870898 (Clockwise)
Preceding gene: 113475542
Following gene: 113475544
Centisome position: 37.04
GC content: 40.34
Gene sequence:
>414_bases ATGACTGAGCCAAGAAAAATCAAGAGAAGCATTGTTATTACTCTAGTATTAATATCCTCAATTTCTTTAATAGCCTGCGC ATCTCGTAGATACAGGCGCGAAGTCTATAGAAGTCTTGAAGACTGTTACAAAGAATGGGGAATTGTAGTTGAATGCGAAC CAGTGACAGACGGAAGTTATTCATCTGAGTATTATTATGGTCCTTACTACTATCAGTCTGGGTATAGTGGTAGATACTTT TATCGAAATAGTAATAGTAGCTATCAACCTGTTCCTAGTAATGCAGGTATTCTCCAAAGTCCTTCGGGAAAGTCTACAAC TTCTGTTGGTACGGTTAATAGAGGTGGTTTTGGTAGTAGAGGTGGTAGAGGTAGTGGTAGCAGTTTGGGTGGTAGAGGCG GTGGCAAAGGTTGA
Upstream 100 bases:
>100_bases TTTATGTTAAGCTTTTGGAAAAATGAAAAAAATGAACATCAGTATTGAAAGCCGGATACTAGAGGCTGTCGGTAGTGATA ACTGATAACGGATAACTGAA
Downstream 100 bases:
>100_bases GCAAACCCCAAATTAAAATTTCAAAATAAAACAGCAAATGAAACGCATAAATATTGAACCTCGTGCTAACTGGCAGCAGA AATGTGAAGCGGTTGGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MTEPRKIKRSIVITLVLISSISLIACASRRYRREVYRSLEDCYKEWGIVVECEPVTDGSYSSEYYYGPYYYQSGYSGRYF YRNSNSSYQPVPSNAGILQSPSGKSTTSVGTVNRGGFGSRGGRGSGSSLGGRGGGKG
Sequences:
>Translated_137_residues MTEPRKIKRSIVITLVLISSISLIACASRRYRREVYRSLEDCYKEWGIVVECEPVTDGSYSSEYYYGPYYYQSGYSGRYF YRNSNSSYQPVPSNAGILQSPSGKSTTSVGTVNRGGFGSRGGRGSGSSLGGRGGGKG >Mature_136_residues TEPRKIKRSIVITLVLISSISLIACASRRYRREVYRSLEDCYKEWGIVVECEPVTDGSYSSEYYYGPYYYQSGYSGRYFY RNSNSSYQPVPSNAGILQSPSGKSTTSVGTVNRGGFGSRGGRGSGSSLGGRGGGKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14950; Mature: 14819
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPRKIKRSIVITLVLISSISLIACASRRYRREVYRSLEDCYKEWGIVVECEPVTDGSY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC SSEYYYGPYYYQSGYSGRYFYRNSNSSYQPVPSNAGILQSPSGKSTTSVGTVNRGGFGSR CCCEEECCEEECCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC GGRGSGSSLGGRGGGKG CCCCCCCCCCCCCCCCC >Mature Secondary Structure TEPRKIKRSIVITLVLISSISLIACASRRYRREVYRSLEDCYKEWGIVVECEPVTDGSY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC SSEYYYGPYYYQSGYSGRYFYRNSNSSYQPVPSNAGILQSPSGKSTTSVGTVNRGGFGSR CCCEEECCEEECCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC GGRGSGSSLGGRGGGKG CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA