Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475424

Identifier: 113475424

GI number: 113475424

Start: 2670584

End: 2670853

Strand: Direct

Name: 113475424

Synonym: Tery_1752

Alternate gene names: NA

Gene position: 2670584-2670853 (Clockwise)

Preceding gene: 113475423

Following gene: 113475425

Centisome position: 34.46

GC content: 39.63

Gene sequence:

>270_bases
ATGGATTCTCAAGCCCAAATCCAAGATGGACAAAAGTCAGATGCTCAAATAGATCTGCGAGGTACTCCATGTCCAATTAA
TTTTGTGAGGACAAAACTGTATCTGGAAAAGATGATGCCTGGAGAAATTTTAGAGGTGTGGTTAGACTCAGGGGAGCCAA
TAGAGCAAGTACCTGATAGTTTGATTGTGGAAGGTTATAAAATAGAAGAAATAAAAGAAAAGTGTGAATATTTTGTCCTC
AAGGTGCGTCGCCCAGAAATGGTTGCATGA

Upstream 100 bases:

>100_bases
ACCTTTGACAACTTGAATTTTAGCTGTACATACCCAAACGACAATAATCAACTTGATATGAGACTTTGTCTCAGTTTTAT
AGAGCAGAAAATATTTAACT

Downstream 100 bases:

>100_bases
ATTGGAATTCAGAAATAGGTGATGTATTTGAGAAGAACTGGTTAGGGACAGTAGTAGCAGTTCAGGCAAATTTTTACCAA
GTTAAGATTGAGAGAAGTTA

Product: SirA-like

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MDSQAQIQDGQKSDAQIDLRGTPCPINFVRTKLYLEKMMPGEILEVWLDSGEPIEQVPDSLIVEGYKIEEIKEKCEYFVL
KVRRPEMVA

Sequences:

>Translated_89_residues
MDSQAQIQDGQKSDAQIDLRGTPCPINFVRTKLYLEKMMPGEILEVWLDSGEPIEQVPDSLIVEGYKIEEIKEKCEYFVL
KVRRPEMVA
>Mature_89_residues
MDSQAQIQDGQKSDAQIDLRGTPCPINFVRTKLYLEKMMPGEILEVWLDSGEPIEQVPDSLIVEGYKIEEIKEKCEYFVL
KVRRPEMVA

Specific function: Unknown

COG id: COG0425

COG function: function code O; Predicted redox protein, regulator of disulfide bond formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10258; Mature: 10258

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSQAQIQDGQKSDAQIDLRGTPCPINFVRTKLYLEKMMPGEILEVWLDSGEPIEQVPDS
CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHCCHH
LIVEGYKIEEIKEKCEYFVLKVRRPEMVA
HHHCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDSQAQIQDGQKSDAQIDLRGTPCPINFVRTKLYLEKMMPGEILEVWLDSGEPIEQVPDS
CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHCCHH
LIVEGYKIEEIKEKCEYFVLKVRRPEMVA
HHHCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA