| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is mhpD1 [H]
Identifier: 113475414
GI number: 113475414
Start: 2653741
End: 2654655
Strand: Direct
Name: mhpD1 [H]
Synonym: Tery_1742
Alternate gene names: 113475414
Gene position: 2653741-2654655 (Clockwise)
Preceding gene: 113475413
Following gene: 113475415
Centisome position: 34.24
GC content: 32.02
Gene sequence:
>915_bases ATGTCTAAATATCTGGTTTTACTCTTAGTATCATTACTTTCAGCTTGTAGTTTTGAAACATCAAAAATACAAGCTGAAGC AGAAACTTCAGAAAAAAATTCTAAACCTACAGTTACTTTAGATAATAATTCCCAGTTCGTAGAAAATCTAGTAGAAAATT ACTTCCAAAAAACTCCAGTCCAAACAAAAGTAGATCTAACTTTATCCCAAGCACAGAAAGTGCAAGATTTGTTTGTAGCA GAAATTAGTCAAGTTCTCGGTCAAGTAGTTGGTTATAAAGCAGCATTAACTAATAAAAAAGCTCAAGAACGTTTTAATGT CTCTCAACCTTTACGAGGTATTTTTCTCGAAAAAATGTTGTGGGAAAATGGTAGTGTTATTTCTGCAAAATTTGGTAGTC GCCCTATTGCAGAAGGGGACTTAATTATGAGGGTAGGAAGTGCAGAAATTAACAATGCTAAAACTCCTAGAGAAACTTTA AAATATTTAGATGCTGTGCTCCCATTTATTGAGTTGGGAGATTTAGTTTATAGTCAAGATGTTAAATTAGATGCACCTGC TCTTTTAGCAATTAATGTTGGGGCAAGATCCGGAATTTTAGGTAAACCTATTCCTGTCTCTGATACTGATGAATGGGAAA ATCGTTTGAAAAGTTTACGGATAGAAATATTAGACCAAAATGACAAGGTATTAGCATCAGGAAATGGTAGTAGTTTATTA GGTAATCCTTTGAATGTTGTTTTGTGGATTAAAGATTCTTTACAAGCACAAGGAAAAGAATTAAAAAAAGGAGATTTACT TTCTTTAGGGAGCATAACTAGCTTTATTCCAGTTAAATCAAATTCTACTATTCGTGCCCAATATATAGATTTAGAGCCAA ATAAAACTATAGAAATATTTGTCAAATTTGAATAA
Upstream 100 bases:
>100_bases GACTGAAAACCTTTTAAATTATGAGTCCTATAAATTGCAAATCAGACGACTCTCCTACTTAACTGCCACCAAAATATTAC AACTTAAATAGAATTGCTAT
Downstream 100 bases:
>100_bases AATTAGGTTGAGCCTCATAATAAAATCTAACCTATTTTATACTTGATTAATAAAAAATTATCTAAATATAATATGATTTA TATAATAATTTTAGAGAAAT
Product: 2-keto-4-pentenoate hydratase-like
Products: NA
Alternate protein names: 2-hydroxypentadienoic acid hydratase 1 [H]
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MSKYLVLLLVSLLSACSFETSKIQAEAETSEKNSKPTVTLDNNSQFVENLVENYFQKTPVQTKVDLTLSQAQKVQDLFVA EISQVLGQVVGYKAALTNKKAQERFNVSQPLRGIFLEKMLWENGSVISAKFGSRPIAEGDLIMRVGSAEINNAKTPRETL KYLDAVLPFIELGDLVYSQDVKLDAPALLAINVGARSGILGKPIPVSDTDEWENRLKSLRIEILDQNDKVLASGNGSSLL GNPLNVVLWIKDSLQAQGKELKKGDLLSLGSITSFIPVKSNSTIRAQYIDLEPNKTIEIFVKFE
Sequences:
>Translated_304_residues MSKYLVLLLVSLLSACSFETSKIQAEAETSEKNSKPTVTLDNNSQFVENLVENYFQKTPVQTKVDLTLSQAQKVQDLFVA EISQVLGQVVGYKAALTNKKAQERFNVSQPLRGIFLEKMLWENGSVISAKFGSRPIAEGDLIMRVGSAEINNAKTPRETL KYLDAVLPFIELGDLVYSQDVKLDAPALLAINVGARSGILGKPIPVSDTDEWENRLKSLRIEILDQNDKVLASGNGSSLL GNPLNVVLWIKDSLQAQGKELKKGDLLSLGSITSFIPVKSNSTIRAQYIDLEPNKTIEIFVKFE >Mature_303_residues SKYLVLLLVSLLSACSFETSKIQAEAETSEKNSKPTVTLDNNSQFVENLVENYFQKTPVQTKVDLTLSQAQKVQDLFVAE ISQVLGQVVGYKAALTNKKAQERFNVSQPLRGIFLEKMLWENGSVISAKFGSRPIAEGDLIMRVGSAEINNAKTPRETLK YLDAVLPFIELGDLVYSQDVKLDAPALLAINVGARSGILGKPIPVSDTDEWENRLKSLRIEILDQNDKVLASGNGSSLLG NPLNVVLWIKDSLQAQGKELKKGDLLSLGSITSFIPVKSNSTIRAQYIDLEPNKTIEIFVKFE
Specific function: Catalyzes the conversion of 2-hydroxypentadienoic acid (enolic form of 2-oxopent-4-enoate) to 4-hydroxy-2-ketopentanoic acid [H]
COG id: COG3971
COG function: function code Q; 2-keto-4-pentenoate hydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hydratase/decarboxylase family. MhpD subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002529 - InterPro: IPR011234 [H]
Pfam domain/function: PF01557 FAA_hydrolase [H]
EC number: =4.2.1.80 [H]
Molecular weight: Translated: 33502; Mature: 33371
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKYLVLLLVSLLSACSFETSKIQAEAETSEKNSKPTVTLDNNSQFVENLVENYFQKTPV CCHHHHHHHHHHHHHCCCCHHHEEEHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCC QTKVDLTLSQAQKVQDLFVAEISQVLGQVVGYKAALTNKKAQERFNVSQPLRGIFLEKML CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHH WENGSVISAKFGSRPIAEGDLIMRVGSAEINNAKTPRETLKYLDAVLPFIELGDLVYSQD HCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC VKLDAPALLAINVGARSGILGKPIPVSDTDEWENRLKSLRIEILDQNDKVLASGNGSSLL CCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCCCEEEECCCCCCCC GNPLNVVLWIKDSLQAQGKELKKGDLLSLGSITSFIPVKSNSTIRAQYIDLEPNKTIEIF CCCEEEEEEEECCHHHCCCCCCCCCCEEECCHHHEEEECCCCEEEEEEEECCCCCEEEEE VKFE EEEC >Mature Secondary Structure SKYLVLLLVSLLSACSFETSKIQAEAETSEKNSKPTVTLDNNSQFVENLVENYFQKTPV CHHHHHHHHHHHHHCCCCHHHEEEHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCC QTKVDLTLSQAQKVQDLFVAEISQVLGQVVGYKAALTNKKAQERFNVSQPLRGIFLEKML CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHH WENGSVISAKFGSRPIAEGDLIMRVGSAEINNAKTPRETLKYLDAVLPFIELGDLVYSQD HCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC VKLDAPALLAINVGARSGILGKPIPVSDTDEWENRLKSLRIEILDQNDKVLASGNGSSLL CCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCCCEEEECCCCCCCC GNPLNVVLWIKDSLQAQGKELKKGDLLSLGSITSFIPVKSNSTIRAQYIDLEPNKTIEIF CCCEEEEEEEECCHHHCCCCCCCCCCEEECCHHHEEEECCCCEEEEEEEECCCCCEEEEE VKFE EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA