Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475236

Identifier: 113475236

GI number: 113475236

Start: 2348274

End: 2349449

Strand: Direct

Name: 113475236

Synonym: Tery_1544

Alternate gene names: NA

Gene position: 2348274-2349449 (Clockwise)

Preceding gene: 113475235

Following gene: 113475237

Centisome position: 30.3

GC content: 30.44

Gene sequence:

>1176_bases
GTGGATAAACAACCTATTGATAATTTAACTATTCATCATTTTCGAGGTATACGAGATTTAACTTTGGAAAATTTAGGTCA
AATAAATTTATTAGTTGGTGTTAATAATTCAGGGAAAACAAGTGTTTTGGAAGCAATTTATACTTATTGTAATCCTTTAG
AACCTTTGGAATGGTTAAATACTGCTTGGCGAAGAGAAGTTAAATCTTCTCGTAAATCAAAGTTAGAATCCCTTAAGTGG
TTATTTCCTCAAAATACTCACAATAATTCAGATAGTTTTTATCAAGGAGAAACTTGGGTTTCTGGTAATAGTACTTTTGG
TTTTCTAGAGTCAAAAGCAACTTATCAAGAAATTGAAGAAATCTGGGATTCTACAAAAGATAATGATGAAGAAGATGAGC
AAGAAAATTTGATTAATGAGATAGATATTGATGATAATGAAATTAGACGTGGTGCAGGTTTAAAACTAAGATTTACTCCT
TTAAAGCTAATACCTAAGTCGGATATATTTGACTATGAAAATGATGAGAAAAATCAGGAAAAGTTTATATCTAAAAATTT
TAGAATCTGGGAAAATCAACCATTAACTATTTTGAATAAATATAAGGGGAACTGGTTATCGGTTGATATAGTTACTCCTT
TTTCTCATAGGATAGAACAGTTGCAAATTAAACTCTTAACAGGTGCAATTTTTCAAGGTTTTAAGCCGGAGATTATTGAG
TTAATTTCAATGATGGATTCGGAAATTCTTGATTTAGAGATTCTTGACATTACAGGTAAAAATTCTCGCCTTTATGTACG
TCATAAAACATTAGGTATTACTCCATTAAGTTCTTTTGGTGATGGCGTTAGTCGGTTATTATTTATGGCTTTAACTATAG
CTAAGTTAAAGGATGGTATTTTGCTAATTGATGAACTGGAAACAGCTATTCATACTGAGGCTTTACTTTTTTCATTTTCT
TGGTTAGTTAAGTGGTGTAGAAAAACGAATGTACAGTTATTTGCTACTACCCATAGTTTAGAAACTGTTGATGCAATGTT
GAATGCTAGTAAGTTAAGAAATGATTTGGTTTTATATCGTTTATATCAAAAAGATATGCAGACTCAAGCAATTAGAATTG
ACCAGGTTAAGCTAACTAGGGTTCGAGAAAATTTAGGTTTAGAAGTAAGATGGTAA

Upstream 100 bases:

>100_bases
TACAACCTGCAACCTAACACCTGCTACTTAATACCTAACACTTAACACTTAAAACCTAAATCGAGGTATATTATAGATAT
CAACTAACCAATAACTAAAA

Downstream 100 bases:

>100_bases
AATATGCATTTTTTTGAGATGAAATGATTTTTAGGAGGTTGTTTGATGTTTAAGGTTGGCAACTATATTTGGTGATTTAT
TGAAGAGCGATCGCTAAACT

Product: ATPase-like protein

Products: NA

Alternate protein names: AAA ATPase

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MDKQPIDNLTIHHFRGIRDLTLENLGQINLLVGVNNSGKTSVLEAIYTYCNPLEPLEWLNTAWRREVKSSRKSKLESLKW
LFPQNTHNNSDSFYQGETWVSGNSTFGFLESKATYQEIEEIWDSTKDNDEEDEQENLINEIDIDDNEIRRGAGLKLRFTP
LKLIPKSDIFDYENDEKNQEKFISKNFRIWENQPLTILNKYKGNWLSVDIVTPFSHRIEQLQIKLLTGAIFQGFKPEIIE
LISMMDSEILDLEILDITGKNSRLYVRHKTLGITPLSSFGDGVSRLLFMALTIAKLKDGILLIDELETAIHTEALLFSFS
WLVKWCRKTNVQLFATTHSLETVDAMLNASKLRNDLVLYRLYQKDMQTQAIRIDQVKLTRVRENLGLEVRW

Sequences:

>Translated_391_residues
MDKQPIDNLTIHHFRGIRDLTLENLGQINLLVGVNNSGKTSVLEAIYTYCNPLEPLEWLNTAWRREVKSSRKSKLESLKW
LFPQNTHNNSDSFYQGETWVSGNSTFGFLESKATYQEIEEIWDSTKDNDEEDEQENLINEIDIDDNEIRRGAGLKLRFTP
LKLIPKSDIFDYENDEKNQEKFISKNFRIWENQPLTILNKYKGNWLSVDIVTPFSHRIEQLQIKLLTGAIFQGFKPEIIE
LISMMDSEILDLEILDITGKNSRLYVRHKTLGITPLSSFGDGVSRLLFMALTIAKLKDGILLIDELETAIHTEALLFSFS
WLVKWCRKTNVQLFATTHSLETVDAMLNASKLRNDLVLYRLYQKDMQTQAIRIDQVKLTRVRENLGLEVRW
>Mature_391_residues
MDKQPIDNLTIHHFRGIRDLTLENLGQINLLVGVNNSGKTSVLEAIYTYCNPLEPLEWLNTAWRREVKSSRKSKLESLKW
LFPQNTHNNSDSFYQGETWVSGNSTFGFLESKATYQEIEEIWDSTKDNDEEDEQENLINEIDIDDNEIRRGAGLKLRFTP
LKLIPKSDIFDYENDEKNQEKFISKNFRIWENQPLTILNKYKGNWLSVDIVTPFSHRIEQLQIKLLTGAIFQGFKPEIIE
LISMMDSEILDLEILDITGKNSRLYVRHKTLGITPLSSFGDGVSRLLFMALTIAKLKDGILLIDELETAIHTEALLFSFS
WLVKWCRKTNVQLFATTHSLETVDAMLNASKLRNDLVLYRLYQKDMQTQAIRIDQVKLTRVRENLGLEVRW

Specific function: Unknown

COG id: COG1106

COG function: function code R; Predicted ATPases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45434; Mature: 45434

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQPIDNLTIHHFRGIRDLTLENLGQINLLVGVNNSGKTSVLEAIYTYCNPLEPLEWLN
CCCCCCCCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHH
TAWRREVKSSRKSKLESLKWLFPQNTHNNSDSFYQGETWVSGNSTFGFLESKATYQEIEE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEECCCCCEEECCCCHHHHHHHH
IWDSTKDNDEEDEQENLINEIDIDDNEIRRGAGLKLRFTPLKLIPKSDIFDYENDEKNQE
HHCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCHHH
KFISKNFRIWENQPLTILNKYKGNWLSVDIVTPFSHRIEQLQIKLLTGAIFQGFKPEIIE
HHHHCCCEEECCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHH
LISMMDSEILDLEILDITGKNSRLYVRHKTLGITPLSSFGDGVSRLLFMALTIAKLKDGI
HHHHHCCHHCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCE
LLIDELETAIHTEALLFSFSWLVKWCRKTNVQLFATTHSLETVDAMLNASKLRNDLVLYR
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
LYQKDMQTQAIRIDQVKLTRVRENLGLEVRW
HHHHHHHHHHEEECHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MDKQPIDNLTIHHFRGIRDLTLENLGQINLLVGVNNSGKTSVLEAIYTYCNPLEPLEWLN
CCCCCCCCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHH
TAWRREVKSSRKSKLESLKWLFPQNTHNNSDSFYQGETWVSGNSTFGFLESKATYQEIEE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEECCCCCEEECCCCHHHHHHHH
IWDSTKDNDEEDEQENLINEIDIDDNEIRRGAGLKLRFTPLKLIPKSDIFDYENDEKNQE
HHCCCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCHHH
KFISKNFRIWENQPLTILNKYKGNWLSVDIVTPFSHRIEQLQIKLLTGAIFQGFKPEIIE
HHHHCCCEEECCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHH
LISMMDSEILDLEILDITGKNSRLYVRHKTLGITPLSSFGDGVSRLLFMALTIAKLKDGI
HHHHHCCHHCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCE
LLIDELETAIHTEALLFSFSWLVKWCRKTNVQLFATTHSLETVDAMLNASKLRNDLVLYR
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
LYQKDMQTQAIRIDQVKLTRVRENLGLEVRW
HHHHHHHHHHEEECHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA