Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475231

Identifier: 113475231

GI number: 113475231

Start: 2335843

End: 2336226

Strand: Direct

Name: 113475231

Synonym: Tery_1538

Alternate gene names: NA

Gene position: 2335843-2336226 (Clockwise)

Preceding gene: 113475230

Following gene: 113475232

Centisome position: 30.14

GC content: 29.17

Gene sequence:

>384_bases
GTGACAGGATGCAGCATGTTAATCAACATGAATAACTTTGAAAAATGCCCTGAGTTTGATGAGGATTATTTTTTATACTA
CGAGGATTTTGACTTTTGTAGACGCTATAAAAAACAAGGTCATAAAATAGCTATTACTCAAACAATATCTGTAATTCATC
AACCATCTTCTATTACTAGTAAACAACCAGGATTAAAACTTGAGTATAGCATATATAGCTACCTGTTGAGTTTAGCAAAA
CATACAAATAAATTAGTTTTAATATATAGATTACTTAGAATTACAATAGCTGCTTTAGTTAGCCTACTAATAGATTATAA
AATAGCTCGTGTTAAAATCAAAGCGATATCGAAATTTATCAGATGTAATCGTAGGTTTTTGTAG

Upstream 100 bases:

>100_bases
AGGTAAAGTTTGGTTTGGTGGCGGGAATTTTATTCCTGAAACTGGAAAAATAATTGCTAATAATTTTTTTTACAAGACAG
AAACATCAATCACAGATTGG

Downstream 100 bases:

>100_bases
AGCTAAGTTAAAGCCAAAAAACTATGATGTAATTGGATAAATTTTGGCCTGATCTGAACCTTGAAGTAAAAATGTTGGGT
TGCCCTGGGATATATTGCTG

Product: glycosyltransferase

Products: NA

Alternate protein names: Family 2 Glycosyl Transferase; Glycosyltransferase

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MTGCSMLINMNNFEKCPEFDEDYFLYYEDFDFCRRYKKQGHKIAITQTISVIHQPSSITSKQPGLKLEYSIYSYLLSLAK
HTNKLVLIYRLLRITIAALVSLLIDYKIARVKIKAISKFIRCNRRFL

Sequences:

>Translated_127_residues
MTGCSMLINMNNFEKCPEFDEDYFLYYEDFDFCRRYKKQGHKIAITQTISVIHQPSSITSKQPGLKLEYSIYSYLLSLAK
HTNKLVLIYRLLRITIAALVSLLIDYKIARVKIKAISKFIRCNRRFL
>Mature_126_residues
TGCSMLINMNNFEKCPEFDEDYFLYYEDFDFCRRYKKQGHKIAITQTISVIHQPSSITSKQPGLKLEYSIYSYLLSLAKH
TNKLVLIYRLLRITIAALVSLLIDYKIARVKIKAISKFIRCNRRFL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14984; Mature: 14853

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGCSMLINMNNFEKCPEFDEDYFLYYEDFDFCRRYKKQGHKIAITQTISVIHQPSSITS
CCCCEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCC
KQPGLKLEYSIYSYLLSLAKHTNKLVLIYRLLRITIAALVSLLIDYKIARVKIKAISKFI
CCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCNRRFL
HHCCCCC
>Mature Secondary Structure 
TGCSMLINMNNFEKCPEFDEDYFLYYEDFDFCRRYKKQGHKIAITQTISVIHQPSSITS
CCCEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCC
KQPGLKLEYSIYSYLLSLAKHTNKLVLIYRLLRITIAALVSLLIDYKIARVKIKAISKFI
CCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCNRRFL
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA