| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113475201
Identifier: 113475201
GI number: 113475201
Start: 2286427
End: 2286921
Strand: Direct
Name: 113475201
Synonym: Tery_1503
Alternate gene names: NA
Gene position: 2286427-2286921 (Clockwise)
Preceding gene: 113475200
Following gene: 113475203
Centisome position: 29.5
GC content: 31.52
Gene sequence:
>495_bases ATGAGCTTAACAGTATGGCGAATCTCTCATAAAAAATACACCAATATTGCTTTGATAGGTGAAGGTTATAATTGTGGCAG AGGTCGTTGGAATTCTAAAGGAACAGCTTTAATTTATACTTCAGCGACATTATCTCTCGCCACATTAGAAACTTTAGTAT ACATGGAAATTGAAAACTTTAGTAACATATTTGTATCTATTAGTATAAAAATTCCTGATAGTTTTTATATTCAACAAGTA GATGAATCTCTATTACCTCATAACTGGCGTGATACTCCTCCAACTGAAGCCTTAGCCTCTATTGGAGATAAATGGTTCAC TTCTCAAACTACAGTTGTATTAAAGGTTCCTTCTGCTATTATTCCTCAAGAATATAACTATTTGATTAATCCTCTACATC CAGATTTTGAAAAAATTTCAATTACTCCACCTCAACCTTTTATCTTAGACCGTAGTATTAAAAGTATAAACAAAAATTTG TTTACAAAACTCTAG
Upstream 100 bases:
>100_bases TGTGGTAGCGGTAATTTTTTTTGTCTTGTTACCTATCTTATTCACCTATCTTCCCTACTCCCTATCGATAATATGTACTT CAAAAATAGGAAACTACTGC
Downstream 100 bases:
>100_bases AACTGATATGTCATTTCAGTTATCAGTGATAGTTATTATTTACCATACTAAATCTCAAGCATTTTTACCAAAAAATTTGG TCTTAAGCCTCGCCCGTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: RES Domain Protein
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MSLTVWRISHKKYTNIALIGEGYNCGRGRWNSKGTALIYTSATLSLATLETLVYMEIENFSNIFVSISIKIPDSFYIQQV DESLLPHNWRDTPPTEALASIGDKWFTSQTTVVLKVPSAIIPQEYNYLINPLHPDFEKISITPPQPFILDRSIKSINKNL FTKL
Sequences:
>Translated_164_residues MSLTVWRISHKKYTNIALIGEGYNCGRGRWNSKGTALIYTSATLSLATLETLVYMEIENFSNIFVSISIKIPDSFYIQQV DESLLPHNWRDTPPTEALASIGDKWFTSQTTVVLKVPSAIIPQEYNYLINPLHPDFEKISITPPQPFILDRSIKSINKNL FTKL >Mature_163_residues SLTVWRISHKKYTNIALIGEGYNCGRGRWNSKGTALIYTSATLSLATLETLVYMEIENFSNIFVSISIKIPDSFYIQQVD ESLLPHNWRDTPPTEALASIGDKWFTSQTTVVLKVPSAIIPQEYNYLINPLHPDFEKISITPPQPFILDRSIKSINKNLF TKL
Specific function: Unknown
COG id: COG5654
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18652; Mature: 18520
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTVWRISHKKYTNIALIGEGYNCGRGRWNSKGTALIYTSATLSLATLETLVYMEIENF CCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECEEEHHHHHEEEEEEECCC SNIFVSISIKIPDSFYIQQVDESLLPHNWRDTPPTEALASIGDKWFTSQTTVVLKVPSAI CEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEECCCCEEEEECCCCC IPQEYNYLINPLHPDFEKISITPPQPFILDRSIKSINKNLFTKL CCCCCCEEECCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHCC >Mature Secondary Structure SLTVWRISHKKYTNIALIGEGYNCGRGRWNSKGTALIYTSATLSLATLETLVYMEIENF CEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECEEEHHHHHEEEEEEECCC SNIFVSISIKIPDSFYIQQVDESLLPHNWRDTPPTEALASIGDKWFTSQTTVVLKVPSAI CEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEECCCCEEEEECCCCC IPQEYNYLINPLHPDFEKISITPPQPFILDRSIKSINKNLFTKL CCCCCCEEECCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA