| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475198
Identifier: 113475198
GI number: 113475198
Start: 2283508
End: 2284245
Strand: Reverse
Name: 113475198
Synonym: Tery_1500
Alternate gene names: NA
Gene position: 2284245-2283508 (Counterclockwise)
Preceding gene: 113475202
Following gene: 113475196
Centisome position: 29.47
GC content: 33.74
Gene sequence:
>738_bases ATGGTCAATGTCAATAATATTAAAACAAATATAGTGGCGATCGCCGCAGTTGCCCTGAGTATTTTTAGCACTCCCCTGGC ACTTGCGGAAAACTACACTAGAGAATTTGACGAACAAGGGTATTTACGTCAAAATCCTGATGTAGCAAAGTTAGTAAGTC AAGGGAAATACCGCTCTGGTTATGAACATTATGTCAGATCTGGGCAATATGAAAATCGCTCTGGTGCTTTCAAAACATTC GCAGAACTTGAATATTTGCGACAAAACCCTGATGTAGTAGATGCTTTACGCCGTGGTAAATTTAAGTCTGCTTACGATCA TTATCTCAAACATGGTCAATATGAAAACCGTTCTGGTGCTTCTTACTCAAAATACCCATCACAACCTCAAGCATTAAATG ATTATTATAACCAATCTTTTATGACTCAGAATAATAGGAATTGTGAAGGCATAAACTATAATTTATCTCAGGAAGCATTT TTCCAAACAGAGAATCGAACTATCCATATTTGTCGATATCAAAATAGCAATAAATTAGTTTTGTTTGAACGAATAAATGG AGATAATTCTGGTTGGATAAATTTTCCTGTAAAATTTGCTGATAATGGTTTTGCTAATCCTAGTATGGGTTATTTTATTA ATGATAATGAATTTATTCGTAGACGAGGAAATCAAATGCTTGATAGAGAAAAAGTTGTAACTAAATTGAGATATAATTAC CGTAAAGTATATCCTTAA
Upstream 100 bases:
>100_bases GTACATTGAAAAATTTTTAACTCCCTAAAATTCTCCACAGTCTTTAAGCCTCAAAGGATATCTTGATAATTAAGAACAAT GATTTTTGAGGTATAAATAA
Downstream 100 bases:
>100_bases ATTTACCAGCTATTTCCTATTGTTCAATAAGTAAAAATTTAAAGGTTTTAACAAGAGTAAAATAACTAAACAAGAAACAG GACTTATTTTCATAATTATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MVNVNNIKTNIVAIAAVALSIFSTPLALAENYTREFDEQGYLRQNPDVAKLVSQGKYRSGYEHYVRSGQYENRSGAFKTF AELEYLRQNPDVVDALRRGKFKSAYDHYLKHGQYENRSGASYSKYPSQPQALNDYYNQSFMTQNNRNCEGINYNLSQEAF FQTENRTIHICRYQNSNKLVLFERINGDNSGWINFPVKFADNGFANPSMGYFINDNEFIRRRGNQMLDREKVVTKLRYNY RKVYP
Sequences:
>Translated_245_residues MVNVNNIKTNIVAIAAVALSIFSTPLALAENYTREFDEQGYLRQNPDVAKLVSQGKYRSGYEHYVRSGQYENRSGAFKTF AELEYLRQNPDVVDALRRGKFKSAYDHYLKHGQYENRSGASYSKYPSQPQALNDYYNQSFMTQNNRNCEGINYNLSQEAF FQTENRTIHICRYQNSNKLVLFERINGDNSGWINFPVKFADNGFANPSMGYFINDNEFIRRRGNQMLDREKVVTKLRYNY RKVYP >Mature_245_residues MVNVNNIKTNIVAIAAVALSIFSTPLALAENYTREFDEQGYLRQNPDVAKLVSQGKYRSGYEHYVRSGQYENRSGAFKTF AELEYLRQNPDVVDALRRGKFKSAYDHYLKHGQYENRSGASYSKYPSQPQALNDYYNQSFMTQNNRNCEGINYNLSQEAF FQTENRTIHICRYQNSNKLVLFERINGDNSGWINFPVKFADNGFANPSMGYFINDNEFIRRRGNQMLDREKVVTKLRYNY RKVYP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28634; Mature: 28634
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNVNNIKTNIVAIAAVALSIFSTPLALAENYTREFDEQGYLRQNPDVAKLVSQGKYRSG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC YEHYVRSGQYENRSGAFKTFAELEYLRQNPDVVDALRRGKFKSAYDHYLKHGQYENRSGA HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCC SYSKYPSQPQALNDYYNQSFMTQNNRNCEGINYNLSQEAFFQTENRTIHICRYQNSNKLV CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHEECCCCEEEEEEECCCCCEE LFERINGDNSGWINFPVKFADNGFANPSMGYFINDNEFIRRRGNQMLDREKVVTKLRYNY EEEEECCCCCCEEEEEEEECCCCCCCCCCCEEECCHHHHHHHCHHHHHHHHHHHHHHHHH RKVYP HCCCC >Mature Secondary Structure MVNVNNIKTNIVAIAAVALSIFSTPLALAENYTREFDEQGYLRQNPDVAKLVSQGKYRSG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC YEHYVRSGQYENRSGAFKTFAELEYLRQNPDVVDALRRGKFKSAYDHYLKHGQYENRSGA HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCC SYSKYPSQPQALNDYYNQSFMTQNNRNCEGINYNLSQEAFFQTENRTIHICRYQNSNKLV CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHEECCCCEEEEEEECCCCCEE LFERINGDNSGWINFPVKFADNGFANPSMGYFINDNEFIRRRGNQMLDREKVVTKLRYNY EEEEECCCCCCEEEEEEEECCCCCCCCCCCEEECCHHHHHHHCHHHHHHHHHHHHHHHHH RKVYP HCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA