| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475185
Identifier: 113475185
GI number: 113475185
Start: 2255847
End: 2257025
Strand: Reverse
Name: 113475185
Synonym: Tery_1485
Alternate gene names: NA
Gene position: 2257025-2255847 (Counterclockwise)
Preceding gene: 113475186
Following gene: 113475183
Centisome position: 29.12
GC content: 33.67
Gene sequence:
>1179_bases ATGCTACCAGATCAAAACTCTCAGTCAGTGCAAATGTTTGTTCAAACCTACGATCGGAATTTAGGTGAAATTTATGATGA GTTATTTTGGGGATATGAAATTAAATATATCAAGGAACAAATTGATAACGAAGATATTATTAATATTTCTGGATGGGTAT TGGGAAAAAAGTGTCCTATTGTTGCTGTGGAAGTAGCATCTTTGAGGCATGTTGTCAAAAAAGTATCTGTTAATGAGTCA TATCCTGATATAGTTAAGTTTTATACAGAAACATCTCAAGGAGCAGAAATAGGTTTTAATATAGATTTTATAGCTGATAA ATTACCACCGAAATTTAACTGGCTAATTCAAGCAGTATTTGCTGATGAAACTCGGATACCAATAGGTTGTATTCAAAGTT ATCAGGAGAAATCACTAAATGTTCGTAAAACTCCTCTAATAACAAAAAAAGCTATTGAATTTTTAGAAAAATTTTTCCAG GAAAAACCTCATGCTAAAGTCTTAGAATTTGGTAGTGGCGCTTCGACAATATGGCTATCTAAATTAACTCAAAATCTGAC TTCTATTGAGCACGATGCTAGGTGGTTTCAGGAGGTAAAAAATCAGATTCAACTGCAGAAAAATTGCCATCCAGTAGATA TTCAATTATTAGCAAGACCATATCATAAAATATGCGAAAAGTTTGCTGAAGAATCTTTCGATTTAATTATTGTAGATGGT CGCGATCGAATGAAATGTTTTGAAGCATCAATTAAACTTTTAAAGCCAGGTGGAATATTGATGTTGGATGATGCGCAAAG GGGGAAGTATAAACAAGCTCAAGATTTATTACAAGATTGGCAATTGACAAAAACTGTTAGCAACCCTCGCCATACTTATT GGTGGGAAAAGCCATTTGAACAAAGGACAGTTATAGGAAAAAGCCAATCAATTTCTAATCAAAGGCCAATATCTCAGAAG ATTAAAGAAAATGTAGTTATAGCTGGTGTGTCAATCGTGAAAGATGAAGAGGATATTATCTATTACAATCTAGCTGGAAA TTATAGAGAAGGCATCAAACATTTCGTAATGTTGGATCATATGTCCTCAGATGGAACTAGGGATGAAATTAGACGCTTTG CTGATGACTATCCAGAAGCAATGGTTTATACCAATTTCCTAAAGTCCGACTACACATAA
Upstream 100 bases:
>100_bases AAAGTCTTCAATAGAAAGAGTGGGGAATAGGAAAAAATTAAAAACATTTTGCGCTCTTTTTATTTTCTCAAGTAAATTTA ACGAAAAATAAATTTTAATT
Downstream 100 bases:
>100_bases TGCTTCAAGAATAAAATCATATCCTGTACAAGAAGCAATATCTTTTTGACTAAATCCAGTTAATATATTTCTCAGGATTC TGCGTAAGAAATCTAAGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MLPDQNSQSVQMFVQTYDRNLGEIYDELFWGYEIKYIKEQIDNEDIINISGWVLGKKCPIVAVEVASLRHVVKKVSVNES YPDIVKFYTETSQGAEIGFNIDFIADKLPPKFNWLIQAVFADETRIPIGCIQSYQEKSLNVRKTPLITKKAIEFLEKFFQ EKPHAKVLEFGSGASTIWLSKLTQNLTSIEHDARWFQEVKNQIQLQKNCHPVDIQLLARPYHKICEKFAEESFDLIIVDG RDRMKCFEASIKLLKPGGILMLDDAQRGKYKQAQDLLQDWQLTKTVSNPRHTYWWEKPFEQRTVIGKSQSISNQRPISQK IKENVVIAGVSIVKDEEDIIYYNLAGNYREGIKHFVMLDHMSSDGTRDEIRRFADDYPEAMVYTNFLKSDYT
Sequences:
>Translated_392_residues MLPDQNSQSVQMFVQTYDRNLGEIYDELFWGYEIKYIKEQIDNEDIINISGWVLGKKCPIVAVEVASLRHVVKKVSVNES YPDIVKFYTETSQGAEIGFNIDFIADKLPPKFNWLIQAVFADETRIPIGCIQSYQEKSLNVRKTPLITKKAIEFLEKFFQ EKPHAKVLEFGSGASTIWLSKLTQNLTSIEHDARWFQEVKNQIQLQKNCHPVDIQLLARPYHKICEKFAEESFDLIIVDG RDRMKCFEASIKLLKPGGILMLDDAQRGKYKQAQDLLQDWQLTKTVSNPRHTYWWEKPFEQRTVIGKSQSISNQRPISQK IKENVVIAGVSIVKDEEDIIYYNLAGNYREGIKHFVMLDHMSSDGTRDEIRRFADDYPEAMVYTNFLKSDYT >Mature_392_residues MLPDQNSQSVQMFVQTYDRNLGEIYDELFWGYEIKYIKEQIDNEDIINISGWVLGKKCPIVAVEVASLRHVVKKVSVNES YPDIVKFYTETSQGAEIGFNIDFIADKLPPKFNWLIQAVFADETRIPIGCIQSYQEKSLNVRKTPLITKKAIEFLEKFFQ EKPHAKVLEFGSGASTIWLSKLTQNLTSIEHDARWFQEVKNQIQLQKNCHPVDIQLLARPYHKICEKFAEESFDLIIVDG RDRMKCFEASIKLLKPGGILMLDDAQRGKYKQAQDLLQDWQLTKTVSNPRHTYWWEKPFEQRTVIGKSQSISNQRPISQK IKENVVIAGVSIVKDEEDIIYYNLAGNYREGIKHFVMLDHMSSDGTRDEIRRFADDYPEAMVYTNFLKSDYT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45559; Mature: 45559
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPDQNSQSVQMFVQTYDRNLGEIYDELFWGYEIKYIKEQIDNEDIINISGWVLGKKCPI CCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCEEECCCCCE VAVEVASLRHVVKKVSVNESYPDIVKFYTETSQGAEIGFNIDFIADKLPPKFNWLIQAVF EEEHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEECCEEEEHHHCCCCCHHHHHHHHH ADETRIPIGCIQSYQEKSLNVRKTPLITKKAIEFLEKFFQEKPHAKVLEFGSGASTIWLS CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHH KLTQNLTSIEHDARWFQEVKNQIQLQKNCHPVDIQLLARPYHKICEKFAEESFDLIIVDG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC RDRMKCFEASIKLLKPGGILMLDDAQRGKYKQAQDLLQDWQLTKTVSNPRHTYWWEKPFE CHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH QRTVIGKSQSISNQRPISQKIKENVVIAGVSIVKDEEDIIYYNLAGNYREGIKHFVMLDH HHHHCCCCCCCCCCCCHHHHHHCCEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHEEC MSSDGTRDEIRRFADDYPEAMVYTNFLKSDYT CCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC >Mature Secondary Structure MLPDQNSQSVQMFVQTYDRNLGEIYDELFWGYEIKYIKEQIDNEDIINISGWVLGKKCPI CCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCEEECCCCCE VAVEVASLRHVVKKVSVNESYPDIVKFYTETSQGAEIGFNIDFIADKLPPKFNWLIQAVF EEEHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEECCEEEEHHHCCCCCHHHHHHHHH ADETRIPIGCIQSYQEKSLNVRKTPLITKKAIEFLEKFFQEKPHAKVLEFGSGASTIWLS CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHH KLTQNLTSIEHDARWFQEVKNQIQLQKNCHPVDIQLLARPYHKICEKFAEESFDLIIVDG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC RDRMKCFEASIKLLKPGGILMLDDAQRGKYKQAQDLLQDWQLTKTVSNPRHTYWWEKPFE CHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH QRTVIGKSQSISNQRPISQKIKENVVIAGVSIVKDEEDIIYYNLAGNYREGIKHFVMLDH HHHHCCCCCCCCCCCCHHHHHHCCEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHEEC MSSDGTRDEIRRFADDYPEAMVYTNFLKSDYT CCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA