| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is thrS [H]
Identifier: 113475159
GI number: 113475159
Start: 2203647
End: 2205473
Strand: Reverse
Name: thrS [H]
Synonym: Tery_1457
Alternate gene names: 113475159
Gene position: 2205473-2203647 (Counterclockwise)
Preceding gene: 113475160
Following gene: 113475158
Centisome position: 28.46
GC content: 39.63
Gene sequence:
>1827_bases ATGTCCAGTTCAGAATCTAGTTCTTCCCCTGAAAAATCAGAAAAAATTCATTTACCCCGCACTAGCGAGTCACAAACTCT CAAAAAAATTCGTCATACCACATCTCATGTCATGGCTATGGCGGTACAAAAGCTATTTCCCAAAGCCCAAGTAACAATCG GTCCATGGATTGAAAATGGCTTCTACTACGACTTTGATACCCTAGAATCATTTACAGAAGCTGACCTAAAAGCCATCAAA AAAGAGATGGTAAAAATCATTAAACGTAATCTACCCGTAATTAGAGAAGAAGTCAGCCGGGAAGAGGCTAAACGTCGAAT TGAAGAAATTAAAGAACCTTATAAATTAGAAATTCTTGAAGATTTAGAAGACCCAATTACCATTTATCATCTTGGTGAAG ACTGGTGGGATTTATGTGCAGGCCCTCATATTGAAAGTACAAAGCAAATTAATCCCAAGGCAATTGAGTTAGAAACTGTG GCAGGTGCTTACTGGCGTGGAGATGAAACCAAAGCCCAATTGCAACGTATTTATGGTACTGCTTGGGAAACTCCAGAACA ACTGACTGAGTATAAAAGACGTAAGGAAGAAGCTCTCAAAAGGAACCATCGTAAACTAGGTAAAGAATTAGGACTATTTA TTTTTTCCGATCTTGTTGGACCAGGGTTGCCTCTTTGGACTCCTAAAGGTACAATGTTAAAAAATTCACTGAAAGACTTT CTTCAACAAGAACAACTGAAACGGGGTTATTTACCTGTAGATACTCCCCATATTGCCAGAATAGATTTATTCAAAACTTC CGGACATTGGCAAAAGTACAAAGAGGATATGTTCCCGATGATGGCTGAGGATGAACAAGCAGAAGCTCTGGAACAGGGTT TTGTTTTAAAACCAATGAACTGTCCCTTTCATATCCAAATCTATAAAAATGAACTACGTTCTTATCGAGAGTTGCCAATA CGACTTGCCGAGTTTGGTACTGTTTACCGCCATGAAAAATCTGGGGAATTAGGTGGTTTAACCCGAGTCCGGGGTTTCAC TCAAGATGATTCTCATTTATTTGTGACACCCGAACAACTTGATGCTGAGTTTCTCAGTGTGGTGGACCTAACTCTATTTG TATTTAAAAGTCTACAACTACAGAACTTTAAGGCTAGATTAAGTTTCCGAGACCCTAATTTAGATAAGTATATTGGTTCT GATGAAGCTTGGGAAAAAGCTGAAGGTGCAATTCGTCGAGCTGTGGAAAAAATGGGTATGGATCATTTTGAGGGTATTGG TGAAGCTGCATTTTATGGTCCAAAGTTAGATTTTATTTTCCAGGATGCTTTGGAGCGAGAATGGCAGCTGGGGACTGTGC AGGTAGACTATAATTTACCGGAACGATTTGATTTAGAATATGTAGCAGAAGATGGTACAAGAAAACGTCCGGTGATGATT CATCGGGCACCTTTTGGTTCCTTGGAAAGGTTGATTGGAATTTTAATTGAGGAGTATGCAGGAGATTTTCCTGTGTGGTT GGCTCCTACCCAGGTTAAACTTTTACCAGTTAATTCTGAATTTTGGCCTTTTGCTCAAGAAGTTGCGGAGCAGATGCTTC AAGTAGGTATTCGTGCTGAAGTGGATATGAGTAATGAGCGTTTGGGTAAGTTGATTCGTAATGCTGAGAAGGCAAAAATT CCTATTATGGCTGTTGTGGGTGCTAAGGAAGTTGAGTCTAATAGTTTGAGTATTCGTACTCGTAGTACTGGTGAATTGGG AAGTATACCTGTGATGGAGGTAATTCAGAAGATGACAAAGGCGATCGCCAATTATGAAAATTTCTAG
Upstream 100 bases:
>100_bases TAAAACTTCAAACTCCTACATTGTGATAACCTAACTAAAATTCAATCTAAGTCCATCTCTGTAAAAATATACAATATTAA AACCTCAGAATAAATAACTA
Downstream 100 bases:
>100_bases GTCTATGTATACAGAAAATCTAAATCTTCAACTAGGGTAATTTTGCCTTATACTTTGAAGCTAACCTTATGAGGTTATTT CAGTTATCAGTTATTATTAC
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 608; Mature: 607
Protein sequence:
>608_residues MSSSESSSSPEKSEKIHLPRTSESQTLKKIRHTTSHVMAMAVQKLFPKAQVTIGPWIENGFYYDFDTLESFTEADLKAIK KEMVKIIKRNLPVIREEVSREEAKRRIEEIKEPYKLEILEDLEDPITIYHLGEDWWDLCAGPHIESTKQINPKAIELETV AGAYWRGDETKAQLQRIYGTAWETPEQLTEYKRRKEEALKRNHRKLGKELGLFIFSDLVGPGLPLWTPKGTMLKNSLKDF LQQEQLKRGYLPVDTPHIARIDLFKTSGHWQKYKEDMFPMMAEDEQAEALEQGFVLKPMNCPFHIQIYKNELRSYRELPI RLAEFGTVYRHEKSGELGGLTRVRGFTQDDSHLFVTPEQLDAEFLSVVDLTLFVFKSLQLQNFKARLSFRDPNLDKYIGS DEAWEKAEGAIRRAVEKMGMDHFEGIGEAAFYGPKLDFIFQDALEREWQLGTVQVDYNLPERFDLEYVAEDGTRKRPVMI HRAPFGSLERLIGILIEEYAGDFPVWLAPTQVKLLPVNSEFWPFAQEVAEQMLQVGIRAEVDMSNERLGKLIRNAEKAKI PIMAVVGAKEVESNSLSIRTRSTGELGSIPVMEVIQKMTKAIANYENF
Sequences:
>Translated_608_residues MSSSESSSSPEKSEKIHLPRTSESQTLKKIRHTTSHVMAMAVQKLFPKAQVTIGPWIENGFYYDFDTLESFTEADLKAIK KEMVKIIKRNLPVIREEVSREEAKRRIEEIKEPYKLEILEDLEDPITIYHLGEDWWDLCAGPHIESTKQINPKAIELETV AGAYWRGDETKAQLQRIYGTAWETPEQLTEYKRRKEEALKRNHRKLGKELGLFIFSDLVGPGLPLWTPKGTMLKNSLKDF LQQEQLKRGYLPVDTPHIARIDLFKTSGHWQKYKEDMFPMMAEDEQAEALEQGFVLKPMNCPFHIQIYKNELRSYRELPI RLAEFGTVYRHEKSGELGGLTRVRGFTQDDSHLFVTPEQLDAEFLSVVDLTLFVFKSLQLQNFKARLSFRDPNLDKYIGS DEAWEKAEGAIRRAVEKMGMDHFEGIGEAAFYGPKLDFIFQDALEREWQLGTVQVDYNLPERFDLEYVAEDGTRKRPVMI HRAPFGSLERLIGILIEEYAGDFPVWLAPTQVKLLPVNSEFWPFAQEVAEQMLQVGIRAEVDMSNERLGKLIRNAEKAKI PIMAVVGAKEVESNSLSIRTRSTGELGSIPVMEVIQKMTKAIANYENF >Mature_607_residues SSSESSSSPEKSEKIHLPRTSESQTLKKIRHTTSHVMAMAVQKLFPKAQVTIGPWIENGFYYDFDTLESFTEADLKAIKK EMVKIIKRNLPVIREEVSREEAKRRIEEIKEPYKLEILEDLEDPITIYHLGEDWWDLCAGPHIESTKQINPKAIELETVA GAYWRGDETKAQLQRIYGTAWETPEQLTEYKRRKEEALKRNHRKLGKELGLFIFSDLVGPGLPLWTPKGTMLKNSLKDFL QQEQLKRGYLPVDTPHIARIDLFKTSGHWQKYKEDMFPMMAEDEQAEALEQGFVLKPMNCPFHIQIYKNELRSYRELPIR LAEFGTVYRHEKSGELGGLTRVRGFTQDDSHLFVTPEQLDAEFLSVVDLTLFVFKSLQLQNFKARLSFRDPNLDKYIGSD EAWEKAEGAIRRAVEKMGMDHFEGIGEAAFYGPKLDFIFQDALEREWQLGTVQVDYNLPERFDLEYVAEDGTRKRPVMIH RAPFGSLERLIGILIEEYAGDFPVWLAPTQVKLLPVNSEFWPFAQEVAEQMLQVGIRAEVDMSNERLGKLIRNAEKAKIP IMAVVGAKEVESNSLSIRTRSTGELGSIPVMEVIQKMTKAIANYENF
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38202255, Length=573, Percent_Identity=38.7434554973822, Blast_Score=389, Evalue=1e-108, Organism=Homo sapiens, GI38570111, Length=572, Percent_Identity=38.4615384615385, Blast_Score=385, Evalue=1e-107, Organism=Homo sapiens, GI20070344, Length=584, Percent_Identity=36.472602739726, Blast_Score=366, Evalue=1e-101, Organism=Escherichia coli, GI1788013, Length=596, Percent_Identity=40.1006711409396, Blast_Score=472, Evalue=1e-134, Organism=Escherichia coli, GI1786392, Length=138, Percent_Identity=26.8115942028986, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71984184, Length=600, Percent_Identity=36, Blast_Score=392, Evalue=1e-109, Organism=Caenorhabditis elegans, GI71984192, Length=600, Percent_Identity=36, Blast_Score=392, Evalue=1e-109, Organism=Saccharomyces cerevisiae, GI6322112, Length=596, Percent_Identity=36.4093959731544, Blast_Score=379, Evalue=1e-106, Organism=Saccharomyces cerevisiae, GI6322654, Length=397, Percent_Identity=35.7682619647355, Blast_Score=251, Evalue=2e-67, Organism=Drosophila melanogaster, GI24583839, Length=586, Percent_Identity=40.1023890784983, Blast_Score=429, Evalue=1e-120, Organism=Drosophila melanogaster, GI24583842, Length=586, Percent_Identity=40.1023890784983, Blast_Score=429, Evalue=1e-120, Organism=Drosophila melanogaster, GI28574141, Length=586, Percent_Identity=40.1023890784983, Blast_Score=429, Evalue=1e-120,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 70044; Mature: 69913
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSESSSSPEKSEKIHLPRTSESQTLKKIRHTTSHVMAMAVQKLFPKAQVTIGPWIENG CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEECCC FYYDFDTLESFTEADLKAIKKEMVKIIKRNLPVIREEVSREEAKRRIEEIKEPYKLEILE EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH DLEDPITIYHLGEDWWDLCAGPHIESTKQINPKAIELETVAGAYWRGDETKAQLQRIYGT CCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCC AWETPEQLTEYKRRKEEALKRNHRKLGKELGLFIFSDLVGPGLPLWTPKGTMLKNSLKDF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH LQQEQLKRGYLPVDTPHIARIDLFKTSGHWQKYKEDMFPMMAEDEQAEALEQGFVLKPMN HHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHCCCEEEECC CPFHIQIYKNELRSYRELPIRLAEFGTVYRHEKSGELGGLTRVRGFTQDDSHLFVTPEQL CCEEEEEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEECHHHH DAEFLSVVDLTLFVFKSLQLQNFKARLSFRDPNLDKYIGSDEAWEKAEGAIRRAVEKMGM HHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCC DHFEGIGEAAFYGPKLDFIFQDALEREWQLGTVQVDYNLPERFDLEYVAEDGTRKRPVMI HHHHCCCCHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCEEE HRAPFGSLERLIGILIEEYAGDFPVWLAPTQVKLLPVNSEFWPFAQEVAEQMLQVGIRAE EECCCHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCE VDMSNERLGKLIRNAEKAKIPIMAVVGAKEVESNSLSIRTRSTGELGSIPVMEVIQKMTK ECCCHHHHHHHHHCCHHCCCCEEEEECCHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHH AIANYENF HHHCCCCC >Mature Secondary Structure SSSESSSSPEKSEKIHLPRTSESQTLKKIRHTTSHVMAMAVQKLFPKAQVTIGPWIENG CCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEECCC FYYDFDTLESFTEADLKAIKKEMVKIIKRNLPVIREEVSREEAKRRIEEIKEPYKLEILE EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH DLEDPITIYHLGEDWWDLCAGPHIESTKQINPKAIELETVAGAYWRGDETKAQLQRIYGT CCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCC AWETPEQLTEYKRRKEEALKRNHRKLGKELGLFIFSDLVGPGLPLWTPKGTMLKNSLKDF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH LQQEQLKRGYLPVDTPHIARIDLFKTSGHWQKYKEDMFPMMAEDEQAEALEQGFVLKPMN HHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHCCCEEEECC CPFHIQIYKNELRSYRELPIRLAEFGTVYRHEKSGELGGLTRVRGFTQDDSHLFVTPEQL CCEEEEEEHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEECHHHH DAEFLSVVDLTLFVFKSLQLQNFKARLSFRDPNLDKYIGSDEAWEKAEGAIRRAVEKMGM HHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCC DHFEGIGEAAFYGPKLDFIFQDALEREWQLGTVQVDYNLPERFDLEYVAEDGTRKRPVMI HHHHCCCCHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCEEE HRAPFGSLERLIGILIEEYAGDFPVWLAPTQVKLLPVNSEFWPFAQEVAEQMLQVGIRAE EECCCHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCE VDMSNERLGKLIRNAEKAKIPIMAVVGAKEVESNSLSIRTRSTGELGSIPVMEVIQKMTK ECCCHHHHHHHHHCCHHCCCCEEEEECCHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHH AIANYENF HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]