| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is algE5 [H]
Identifier: 113475152
GI number: 113475152
Start: 2188783
End: 2191536
Strand: Reverse
Name: algE5 [H]
Synonym: Tery_1450
Alternate gene names: 113475152
Gene position: 2191536-2188783 (Counterclockwise)
Preceding gene: 113475153
Following gene: 113475151
Centisome position: 28.28
GC content: 40.38
Gene sequence:
>2754_bases ATGATAGTAGCTCACAATAATAATGCTACAGCTTCCTCAGTTATATCAACATTCACTAAGGAAGTAAGAACGGAAAAGTC TTTAGTAGCAATAGATAAATCTCTAGAACATTACCCTCAATTAGTCAGAGGGATAGCAGGGCAAAAGTCTATAGTTTTAT TAGATGGAGATAGGGACGCGATATCTCAAATCTCCGAAGCACTATCCCAAACAAATGCAGAAAGTCTGAGTATTATCTGT CACGGCGAGCCTGGTACTTTGTATCTTGGCAACAAGCTGCTTAAAGCTAGCAACATAGATGAATACAACTACTTACTCTC GGAATGGGGAGTCAAGGAAATTCAACTATATGCCTGTAGCGTTGCCAGAGATGAAGAATTTATAGGCCGCCTCCAGCAGT TAACGGGAGCGAATATAGCTGCATCCAGAGACAAAGTGGGAAATATAGCTCTTGGTGGAACTTCTCAACTGGAAAATCAA ATAGGGGAAAATCAACTTGTATCAGAGGCGATCGCCAACTACCCGGGACTTTTGGAGATAAAATTTATCCCATCCCAAGA CTCTCCAGTCTTCTATGAATTCGAAGATCTACCAGCTTATTTTGCCTTTGGAGACTTCAACAAAGATGAAAAATTAGACC GCATAGTTCTGGAAGGATCTATAGACCCAGATACATTATCCCCCATTACAACAGTCTTCATCGAATTCGGAAATGGAAAA GGCAAATTTCCAAAGCGTAGCAAAAGTCTGGAGTTGCTAGGTAATCCCACTGACATCCAAATAGGAGAACTCGACGGAAA TGGCAACCTAGACGCAGTAGCAGTTACCAGTGCATATAACACAAAAACTAATGAGACTTTCGGCAAAATTACGGCTTTAA AGGTAGACGATACAGGGAAACTAACCGTCGATACCCAACTTAATGTCATAAATACCGATTTGATATCCTTTGCAGATGTT AATAACGACGGTTTAGATGATTTGTCTTTAAGCAATTACTCATCCTCATTCTCTACCCCAAGCAAGATCGAGATACGATT AAGAAAAAACCAAAAGTTTGAGGCGGTTGATAATTCTCCTTTTGCAGCTTTCGACGCCAAATTTAATCCAGTAGCGCTCG GAGACTTCAACGGTGACGGTTTGATGGATCGGGTGAAGAGCGTTTTCAACTACTCCTCTGGAAAAACTACAATTTCTATA GACTTGGGGCAGAAAAATGGCAAGTTTAAACCCTTAAAAACATCCAGCATTATGTTAGAAGATGATGGACTGGTAGGAGT AGGTGAATTTAACGGCGATGGCAACCTCGATCTAGCCATTCTGTCATATTCGGGATCTTCGGGATATTATGATTATTCTG ATCTTGGCCCCAGCAAGCAAAAAATTTCCTTACTTCTGGGAGACGGTAAAGGTAAATTTACTCTGGATACAGAAGTTGCT TTTGAGGAAGATAGTTTCCCCTTCCTCTCCATTGAAGACGTCAACAATGATGGATTAGACGATATAACAGTCAGTTCAAC TGAAACATCTAGAGAAAGCTCGATCCGCATTGACCTGAGCAAGACAAACGGCAAATTGGATAAATCTGTTGATGTTAAAG TAGAAAATCTGATTGACCTTGTAGGAGGAGGTGACATTAACAAGGACGGCAAACAAGATTTAGTGGTACGGACAGGAGGA ATGGATCCTGACGAATCTCAAAAAATTCAGGTGTTGTTAGGTCAAGGTAAGGGTAAATTTAAGGAAGGAAAAACCGTCAA ATTGGAAGAGCAGATCGATGATGCCATCGTAGGAGATTTTAATGGCGACGGTAACTTCGACATAGCAACGTTCAAGAATA ATTTTTCGTTTGGTCCATATTCCCCAGATTTGCCTGGTCCATATTCCCCATATTCCTCCCCTAAAACAATATCCGTATTT TTAGGGAATGGCAAAGGCAATTTTTCTACTACTCCCAAGACCTTAGAAACCAAAAGTGAAAGTTTTCTTCAAAGTAACAA TTTTGCTTTGGGAGATTTCAATGAGGATGGCAACATAGATATAGCTCAGGCTCAATTCTCCACTGAGACTACTAATCAAT TCTCTGTGCTTTATAATCAAGGTGAGAAGCCTCCCGAAGCTATCAAGTCGAACAAAAACCATACCCTCAAAGACGAAGAA GTAGATTTGAGATTGATTGGTAAGGGCAATATTAATGGTACTGGTAACGAGTTAGATAACAATATTACTGGTAATACAAA GCGAAACCGGCTCAAAGGTTTGGATGGTAACGATACTCTTACTGGGGGTCAGGGTAATGACATGTTGATGGGAGGTAATG ATGATGACATCCTGACTGGGGGTAAGGGTAATGACATGTTGATGGGAGGTAATGACGATGATACCTTAACTGGAGGTCAG GGTAAAGATCGTTTTAAGTTTAGTAGCAATAGCTCTTTTAAGCCTGAAGACTTTGGCCTAGATACCATAACTGATTTTAA AAGTGGCCAGGATGCTATTCTTTTAAGCCAAAAAACTTTTGATAAGTTAGAAAGCACTTTAGGTAAAGGTTTTAGCGTTA TCGCTGAATTTGATGCCGTTGCTAACAATGAGGAGGCTGAAACTAGTGACGCATTTATCGTTTACAGCAAAGAAACCGGT GATTTGTTCTACAATGAGAATGGTAGCGAGGCTGGCTTTGGTAGTGGCGGTAATTTTGCTATTCTGGAAGGGAAACCGAA CCTAAAAGGAACTGATTTCTCTATTGTTAAGTAG
Upstream 100 bases:
>100_bases AGAAAGTGTTAAAGTTTATTAAAACCCCCTAACTACAAAAAAATATGCTAGATTGAATTAGTCAAAAAAAAAGAGATAAA GTTTAGAGGTTAAGTGTATA
Downstream 100 bases:
>100_bases ACCATTGACTTAATTAAAAAGCTTACCCAGAACTTACTCATCACCACCATATATAGTAGGAACTTTACAGCAGTTGAAAT CACTGCAATTCTCTAACTTC
Product: hemolysin-type calcium-binding protein
Products: NA
Alternate protein names: Mannuronan epimerase 5 [H]
Number of amino acids: Translated: 917; Mature: 917
Protein sequence:
>917_residues MIVAHNNNATASSVISTFTKEVRTEKSLVAIDKSLEHYPQLVRGIAGQKSIVLLDGDRDAISQISEALSQTNAESLSIIC HGEPGTLYLGNKLLKASNIDEYNYLLSEWGVKEIQLYACSVARDEEFIGRLQQLTGANIAASRDKVGNIALGGTSQLENQ IGENQLVSEAIANYPGLLEIKFIPSQDSPVFYEFEDLPAYFAFGDFNKDEKLDRIVLEGSIDPDTLSPITTVFIEFGNGK GKFPKRSKSLELLGNPTDIQIGELDGNGNLDAVAVTSAYNTKTNETFGKITALKVDDTGKLTVDTQLNVINTDLISFADV NNDGLDDLSLSNYSSSFSTPSKIEIRLRKNQKFEAVDNSPFAAFDAKFNPVALGDFNGDGLMDRVKSVFNYSSGKTTISI DLGQKNGKFKPLKTSSIMLEDDGLVGVGEFNGDGNLDLAILSYSGSSGYYDYSDLGPSKQKISLLLGDGKGKFTLDTEVA FEEDSFPFLSIEDVNNDGLDDITVSSTETSRESSIRIDLSKTNGKLDKSVDVKVENLIDLVGGGDINKDGKQDLVVRTGG MDPDESQKIQVLLGQGKGKFKEGKTVKLEEQIDDAIVGDFNGDGNFDIATFKNNFSFGPYSPDLPGPYSPYSSPKTISVF LGNGKGNFSTTPKTLETKSESFLQSNNFALGDFNEDGNIDIAQAQFSTETTNQFSVLYNQGEKPPEAIKSNKNHTLKDEE VDLRLIGKGNINGTGNELDNNITGNTKRNRLKGLDGNDTLTGGQGNDMLMGGNDDDILTGGKGNDMLMGGNDDDTLTGGQ GKDRFKFSSNSSFKPEDFGLDTITDFKSGQDAILLSQKTFDKLESTLGKGFSVIAEFDAVANNEEAETSDAFIVYSKETG DLFYNENGSEAGFGSGGNFAILEGKPNLKGTDFSIVK
Sequences:
>Translated_917_residues MIVAHNNNATASSVISTFTKEVRTEKSLVAIDKSLEHYPQLVRGIAGQKSIVLLDGDRDAISQISEALSQTNAESLSIIC HGEPGTLYLGNKLLKASNIDEYNYLLSEWGVKEIQLYACSVARDEEFIGRLQQLTGANIAASRDKVGNIALGGTSQLENQ IGENQLVSEAIANYPGLLEIKFIPSQDSPVFYEFEDLPAYFAFGDFNKDEKLDRIVLEGSIDPDTLSPITTVFIEFGNGK GKFPKRSKSLELLGNPTDIQIGELDGNGNLDAVAVTSAYNTKTNETFGKITALKVDDTGKLTVDTQLNVINTDLISFADV NNDGLDDLSLSNYSSSFSTPSKIEIRLRKNQKFEAVDNSPFAAFDAKFNPVALGDFNGDGLMDRVKSVFNYSSGKTTISI DLGQKNGKFKPLKTSSIMLEDDGLVGVGEFNGDGNLDLAILSYSGSSGYYDYSDLGPSKQKISLLLGDGKGKFTLDTEVA FEEDSFPFLSIEDVNNDGLDDITVSSTETSRESSIRIDLSKTNGKLDKSVDVKVENLIDLVGGGDINKDGKQDLVVRTGG MDPDESQKIQVLLGQGKGKFKEGKTVKLEEQIDDAIVGDFNGDGNFDIATFKNNFSFGPYSPDLPGPYSPYSSPKTISVF LGNGKGNFSTTPKTLETKSESFLQSNNFALGDFNEDGNIDIAQAQFSTETTNQFSVLYNQGEKPPEAIKSNKNHTLKDEE VDLRLIGKGNINGTGNELDNNITGNTKRNRLKGLDGNDTLTGGQGNDMLMGGNDDDILTGGKGNDMLMGGNDDDTLTGGQ GKDRFKFSSNSSFKPEDFGLDTITDFKSGQDAILLSQKTFDKLESTLGKGFSVIAEFDAVANNEEAETSDAFIVYSKETG DLFYNENGSEAGFGSGGNFAILEGKPNLKGTDFSIVK >Mature_917_residues MIVAHNNNATASSVISTFTKEVRTEKSLVAIDKSLEHYPQLVRGIAGQKSIVLLDGDRDAISQISEALSQTNAESLSIIC HGEPGTLYLGNKLLKASNIDEYNYLLSEWGVKEIQLYACSVARDEEFIGRLQQLTGANIAASRDKVGNIALGGTSQLENQ IGENQLVSEAIANYPGLLEIKFIPSQDSPVFYEFEDLPAYFAFGDFNKDEKLDRIVLEGSIDPDTLSPITTVFIEFGNGK GKFPKRSKSLELLGNPTDIQIGELDGNGNLDAVAVTSAYNTKTNETFGKITALKVDDTGKLTVDTQLNVINTDLISFADV NNDGLDDLSLSNYSSSFSTPSKIEIRLRKNQKFEAVDNSPFAAFDAKFNPVALGDFNGDGLMDRVKSVFNYSSGKTTISI DLGQKNGKFKPLKTSSIMLEDDGLVGVGEFNGDGNLDLAILSYSGSSGYYDYSDLGPSKQKISLLLGDGKGKFTLDTEVA FEEDSFPFLSIEDVNNDGLDDITVSSTETSRESSIRIDLSKTNGKLDKSVDVKVENLIDLVGGGDINKDGKQDLVVRTGG MDPDESQKIQVLLGQGKGKFKEGKTVKLEEQIDDAIVGDFNGDGNFDIATFKNNFSFGPYSPDLPGPYSPYSSPKTISVF LGNGKGNFSTTPKTLETKSESFLQSNNFALGDFNEDGNIDIAQAQFSTETTNQFSVLYNQGEKPPEAIKSNKNHTLKDEE VDLRLIGKGNINGTGNELDNNITGNTKRNRLKGLDGNDTLTGGQGNDMLMGGNDDDILTGGKGNDMLMGGNDDDTLTGGQ GKDRFKFSSNSSFKPEDFGLDTITDFKSGQDAILLSQKTFDKLESTLGKGFSVIAEFDAVANNEEAETSDAFIVYSKETG DLFYNENGSEAGFGSGGNFAILEGKPNLKGTDFSIVK
Specific function: Converts beta-D-mannuronic acid (M) to alpha-L-guluronic acid (G), producing a polymer with gel-forming capacity, required for the formation of the cyst coat [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, extracellular space. Note=Probably exported via the hemolysin-type secretion pathway [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 7 PbH1 repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006633 - InterPro: IPR018511 - InterPro: IPR001343 - InterPro: IPR006626 - InterPro: IPR012334 - InterPro: IPR011050 - InterPro: IPR011049 [H]
Pfam domain/function: PF00353 HemolysinCabind [H]
EC number: NA
Molecular weight: Translated: 99001; Mature: 99001
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: PS00599 AA_TRANSFER_CLASS_2 ; PS00330 HEMOLYSIN_CALCIUM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVAHNNNATASSVISTFTKEVRTEKSLVAIDKSLEHYPQLVRGIAGQKSIVLLDGDRDA CEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH ISQISEALSQTNAESLSIICHGEPGTLYLGNKLLKASNIDEYNYLLSEWGVKEIQLYACS HHHHHHHHHHCCCCEEEEEEECCCCEEEECCEEEECCCCCHHHHHHHHCCCCEEEEEEEE VARDEEFIGRLQQLTGANIAASRDKVGNIALGGTSQLENQIGENQLVSEAIANYPGLLEI CCCCHHHHHHHHHHCCCCEEECCCCCCEEEECCHHHHHHHCCHHHHHHHHHHCCCCEEEE KFIPSQDSPVFYEFEDLPAYFAFGDFNKDEKLDRIVLEGSIDPDTLSPITTVFIEFGNGK EEECCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCC GKFPKRSKSLELLGNPTDIQIGELDGNGNLDAVAVTSAYNTKTNETFGKITALKVDDTGK CCCCCCCCCEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCC LTVDTQLNVINTDLISFADVNNDGLDDLSLSNYSSSFSTPSKIEIRLRKNQKFEAVDNSP EEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCC FAAFDAKFNPVALGDFNGDGLMDRVKSVFNYSSGKTTISIDLGQKNGKFKPLKTSSIMLE CEEECCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEECCEEEEE DDGLVGVGEFNGDGNLDLAILSYSGSSGYYDYSDLGPSKQKISLLLGDGKGKFTLDTEVA CCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHCCCCCCEEEEEEEECCCCCEEEEEEEE FEEDSFPFLSIEDVNNDGLDDITVSSTETSRESSIRIDLSKTNGKLDKSVDVKVENLIDL ECCCCCCEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEECEEHHHHHHH VGGGDINKDGKQDLVVRTGGMDPDESQKIQVLLGQGKGKFKEGKTVKLEEQIDDAIVGDF HCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEHHHCCCEEEECC NGDGNFDIATFKNNFSFGPYSPDLPGPYSPYSSPKTISVFLGNGKGNFSTTPKTLETKSE CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCH SFLQSNNFALGDFNEDGNIDIAQAQFSTETTNQFSVLYNQGEKPPEAIKSNKNHTLKDEE HHHHCCCEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCC VDLRLIGKGNINGTGNELDNNITGNTKRNRLKGLDGNDTLTGGQGNDMLMGGNDDDILTG EEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCEEEECCCCCCEEEC GKGNDMLMGGNDDDTLTGGQGKDRFKFSSNSSFKPEDFGLDTITDFKSGQDAILLSQKTF CCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEEHHHH DKLESTLGKGFSVIAEFDAVANNEEAETSDAFIVYSKETGDLFYNENGSEAGFGSGGNFA HHHHHHHCCCEEEEEEHHHHCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCEE ILEGKPNLKGTDFSIVK EEECCCCCCCCCEEEEC >Mature Secondary Structure MIVAHNNNATASSVISTFTKEVRTEKSLVAIDKSLEHYPQLVRGIAGQKSIVLLDGDRDA CEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHH ISQISEALSQTNAESLSIICHGEPGTLYLGNKLLKASNIDEYNYLLSEWGVKEIQLYACS HHHHHHHHHHCCCCEEEEEEECCCCEEEECCEEEECCCCCHHHHHHHHCCCCEEEEEEEE VARDEEFIGRLQQLTGANIAASRDKVGNIALGGTSQLENQIGENQLVSEAIANYPGLLEI CCCCHHHHHHHHHHCCCCEEECCCCCCEEEECCHHHHHHHCCHHHHHHHHHHCCCCEEEE KFIPSQDSPVFYEFEDLPAYFAFGDFNKDEKLDRIVLEGSIDPDTLSPITTVFIEFGNGK EEECCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCC GKFPKRSKSLELLGNPTDIQIGELDGNGNLDAVAVTSAYNTKTNETFGKITALKVDDTGK CCCCCCCCCEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCC LTVDTQLNVINTDLISFADVNNDGLDDLSLSNYSSSFSTPSKIEIRLRKNQKFEAVDNSP EEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCC FAAFDAKFNPVALGDFNGDGLMDRVKSVFNYSSGKTTISIDLGQKNGKFKPLKTSSIMLE CEEECCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEECCEEEEE DDGLVGVGEFNGDGNLDLAILSYSGSSGYYDYSDLGPSKQKISLLLGDGKGKFTLDTEVA CCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHCCCCCCEEEEEEEECCCCCEEEEEEEE FEEDSFPFLSIEDVNNDGLDDITVSSTETSRESSIRIDLSKTNGKLDKSVDVKVENLIDL ECCCCCCEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEECEEHHHHHHH VGGGDINKDGKQDLVVRTGGMDPDESQKIQVLLGQGKGKFKEGKTVKLEEQIDDAIVGDF HCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEHHHCCCEEEECC NGDGNFDIATFKNNFSFGPYSPDLPGPYSPYSSPKTISVFLGNGKGNFSTTPKTLETKSE CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCH SFLQSNNFALGDFNEDGNIDIAQAQFSTETTNQFSVLYNQGEKPPEAIKSNKNHTLKDEE HHHHCCCEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCC VDLRLIGKGNINGTGNELDNNITGNTKRNRLKGLDGNDTLTGGQGNDMLMGGNDDDILTG EEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCEEEECCCCCCEEEC GKGNDMLMGGNDDDTLTGGQGKDRFKFSSNSSFKPEDFGLDTITDFKSGQDAILLSQKTF CCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEEHHHH DKLESTLGKGFSVIAEFDAVANNEEAETSDAFIVYSKETGDLFYNENGSEAGFGSGGNFA HHHHHHHCCCEEEEEEHHHHCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCEE ILEGKPNLKGTDFSIVK EEECCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7476166; 11243259; 10937941 [H]