| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475114
Identifier: 113475114
GI number: 113475114
Start: 2133698
End: 2135026
Strand: Direct
Name: 113475114
Synonym: Tery_1403
Alternate gene names: NA
Gene position: 2133698-2135026 (Clockwise)
Preceding gene: 113475113
Following gene: 113475115
Centisome position: 27.53
GC content: 31.9
Gene sequence:
>1329_bases ATGATCAAAATTAAAAACTTATTTATAACCAGCAGTTTTTTTTGCCTTTACCTTTCAACTTCTTGTTTAGCAAAAACTAA TGAGTTTCCTGAATATACTCTAAAAAAAATATCTATAAATATTATTTCTCAACGTCAAATAGAAAAAGAAGAGGAGTTAG AATCTCTAGATATATTTTCTCCTAATCCTCTAGAAAATACTAAACCAGATCCACTATTACCAAATCCTCCTACTTCTGGA ATTATAACTGGAGAAAAACGAGAAAAACTTTCTCAGAAACTCGAGCAACTTAATGTTGAAGCAGCAGCATTATTAGCAGC AGGAGACAAAACTAAAGCTTTTGAAATTTGGAACAGAGAATTACGTTTGCGTCGTTATCTTGGTCAAGTAGAAGAGTTAG CAGCTTTGTCAAGAGTTGCTGAAATAGCTTGGGATAATAGTCAAAAATTACAGGTGCAATGGATTACAAAAAGACTCCAA ATTATACAACCAGAAATTCAACGGGAAGAACCTCCTAATTTTGAATTATTACAAGCATTAGGTTCAGCATTTAATACAGT TCGAGCTAAAGATTCAGCAGTTGAAGTTTATCAACAGGTTATTAGTGAGGCAAGGAAACAAGAGGATTTTGTTACGCTAA AACAAGCTTTAATATCTGTAGGAGAAATATATTTGAATTGGTTGGATTATGATAATGCAGCGATCGCCTATGAAGAATTA TTAGATGTTCAGCAGCAGAGTAATTCAGAATTCTCTAAAATAGAAACAACAAATCCTTCTATAAATGGTAATTTTGAAAA AGCAAATACTCTGAAACAATTAGCTTTCATTTATAGTCAAGGGGGGAAACTTTTACCAGCAATTACAGCTAAAGAAAGAT TAGTAGATTTTTACGAAGGTCAACAAAATATTGCAGAAGTTTCAGAGATAAAAATTTCCATTGCTGAAAATTATGAGGAA TTGGGAAGACTTAATCTTGCCAGTCAATACTATCAAGAAGCTTATAGTATTGCTCAATCAATTCAACAATTTTTAACTGC CAGTGATGCTTTAGAAAATTTAGCAGCCCTCTATCTTTCTCAAGATGAAAAAGAGGCAGCAATTGAAATATATAAGGTAC AATTATTAATGGTTCAACAGTTTGTTAATGTTTATGGTATGATGGAAATTTATGATCGGATGGGGCAAGTTTATGCGCAG TTAAAGGCTTTTAGTTTCGCAATGTCATCTTTTCAAAAAGGTTTAGAATTATCGAGACAATTGGGTGGATATCGAGAAAG TTATTTTCTACAAAAGCTTGAAAAATTGAATAGAAATAGAAATAAGTGA
Upstream 100 bases:
>100_bases AAATATTTTTGTATTTTTTGAAATAAATCCCTCATACTACCTAAACCTTTATCCATTCGATATAATTATTAATCGTTGAA ACACTAAAATAATAGTTAAA
Downstream 100 bases:
>100_bases TTAGACTTAAATTTTTTAGTAGGCCTTGAGCAATATCTATCTTGGATATAAATTACTACTAGGGGTAGAATTTTTTGGGT TTTTGTATTTGAGTAATATC
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide Domain Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Domain-Containing Protein
Number of amino acids: Translated: 442; Mature: 442
Protein sequence:
>442_residues MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFSPNPLENTKPDPLLPNPPTSG IITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRELRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQ IIQPEIQREEPPNFELLQALGSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEGQQNIAEVSEIKISIAENYEE LGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLSQDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQ LKAFSFAMSSFQKGLELSRQLGGYRESYFLQKLEKLNRNRNK
Sequences:
>Translated_442_residues MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFSPNPLENTKPDPLLPNPPTSG IITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRELRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQ IIQPEIQREEPPNFELLQALGSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEGQQNIAEVSEIKISIAENYEE LGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLSQDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQ LKAFSFAMSSFQKGLELSRQLGGYRESYFLQKLEKLNRNRNK >Mature_442_residues MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFSPNPLENTKPDPLLPNPPTSG IITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRELRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQ IIQPEIQREEPPNFELLQALGSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEGQQNIAEVSEIKISIAENYEE LGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLSQDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQ LKAFSFAMSSFQKGLELSRQLGGYRESYFLQKLEKLNRNRNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50613; Mature: 50613
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFS CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC PNPLENTKPDPLLPNPPTSGIITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRE CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHH LRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQIIQPEIQREEPPNFELLQAL HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCHHCCCCCCCHHHHHHH GSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEG HHHHHHCCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHC QQNIAEVSEIKISIAENYEELGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLS HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQLKAFSFAMSSFQKGLELSRQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGGYRESYFLQKLEKLNRNRNK HCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIKIKNLFITSSFFCLYLSTSCLAKTNEFPEYTLKKISINIISQRQIEKEEELESLDIFS CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC PNPLENTKPDPLLPNPPTSGIITGEKREKLSQKLEQLNVEAAALLAAGDKTKAFEIWNRE CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHH LRLRRYLGQVEELAALSRVAEIAWDNSQKLQVQWITKRLQIIQPEIQREEPPNFELLQAL HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCHHCCCCCCCHHHHHHH GSAFNTVRAKDSAVEVYQQVISEARKQEDFVTLKQALISVGEIYLNWLDYDNAAIAYEEL HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LDVQQQSNSEFSKIETTNPSINGNFEKANTLKQLAFIYSQGGKLLPAITAKERLVDFYEG HHHHHHCCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHC QQNIAEVSEIKISIAENYEELGRLNLASQYYQEAYSIAQSIQQFLTASDALENLAALYLS HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QDEKEAAIEIYKVQLLMVQQFVNVYGMMEIYDRMGQVYAQLKAFSFAMSSFQKGLELSRQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGGYRESYFLQKLEKLNRNRNK HCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA