Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475035

Identifier: 113475035

GI number: 113475035

Start: 1972786

End: 1973562

Strand: Reverse

Name: 113475035

Synonym: Tery_1292

Alternate gene names: NA

Gene position: 1973562-1972786 (Counterclockwise)

Preceding gene: 113475038

Following gene: 113475033

Centisome position: 25.46

GC content: 30.5

Gene sequence:

>777_bases
ATGAATAAAAATTTACCACAACTGCATCATATTTCTGGTTCTGATATTGCTGATCAGAGTTTAGATGAAATATCAACAAA
AAGAAAGAGTAGAATTGTTAGTAGGTTCCTATCTCCTGCTTTGCAATTTTGGTTAAAATCACAATTAGAACAGGTAGAAC
AATTAAAGGTTCATATTGAAGGAGGTGATCGCCAAATTATTACAGGTCAAATCCCACGAGTTTCTCTTGCTGCTTCTAAT
GTCATTTTTCGAGGATTACATTTGACTGAGGTGAAATTATCTGCTACTGGTATTCGGATTAATATTGGTCAAATTATCAG
GGGAAAAAAATTGAAAATCTTAGAATCTTTTCCTATATTTTGTCAGATTAAATGTCTTCAATCTGACTTTAATTCTAGTC
TAAAATCTGGTCTTTTGTCTCAGGCTATTGTTGATTTTTTAACCCCACTATTACAGTCAGATTTTATAGAATGCCTAGAG
AAACCTATTCGATTGTATGACCAAAAAGCTGAAATATTTACAGGTCATCTTAGTCTGTTTGCTAACTTTATGTCTAAGTT
TGATGAAAAAATCCCAATAAATTTACATACTAGTTTAAAGCTTGCTACTAGTTGTAAATTATTGCTAGAAAATTTTGAAT
TTCAAGTTTTACAAAAGTCTAATTATGACCTTTCAAATACCATCAAAGTAGATTTAGGTTCTGATGTTAAACTACAAGAA
TTAACATTAGAATCTGGTCAACTTATTTGTCAAGGTAGCTTAATAGTTAAATCCTAA

Upstream 100 bases:

>100_bases
CTACCCTAAATATTTAAAATCTGCTAGTTTATATATTTCTTATCTCTGGAAATAATTACACAATTGAGTATAGAGTATAC
TAATCCTCATGGTGTCTTTA

Downstream 100 bases:

>100_bases
ATTCAACTATTAAAATTATTATTAGGAGTAAGGTACAAAATTCATTCTAGATTTTAGGGAAAAGCAAATAATTTGAGAAC
ACAAAAGAAGAAAAACAACT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIEGGDRQIITGQIPRVSLAASN
VIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIFCQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLE
KPIRLYDQKAEIFTGHLSLFANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE
LTLESGQLICQGSLIVKS

Sequences:

>Translated_258_residues
MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIEGGDRQIITGQIPRVSLAASN
VIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIFCQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLE
KPIRLYDQKAEIFTGHLSLFANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE
LTLESGQLICQGSLIVKS
>Mature_258_residues
MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIEGGDRQIITGQIPRVSLAASN
VIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIFCQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLE
KPIRLYDQKAEIFTGHLSLFANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE
LTLESGQLICQGSLIVKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29010; Mature: 29010

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIE
CCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
GGDRQIITGQIPRVSLAASNVIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIF
CCCEEEEECCCCEEEHHHHHHHHCCCEEEEEEEEECEEEEEHHHHHCCCEEEEEECCCCE
CQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLEKPIRLYDQKAEIFTGHLSLF
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE
HHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCHHEEEECCCCCCCCEEEEECCCCCEEEE
LTLESGQLICQGSLIVKS
EEECCCCEEEECCEEECC
>Mature Secondary Structure
MNKNLPQLHHISGSDIADQSLDEISTKRKSRIVSRFLSPALQFWLKSQLEQVEQLKVHIE
CCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
GGDRQIITGQIPRVSLAASNVIFRGLHLTEVKLSATGIRINIGQIIRGKKLKILESFPIF
CCCEEEEECCCCEEEHHHHHHHHCCCEEEEEEEEECEEEEEHHHHHCCCEEEEEECCCCE
CQIKCLQSDFNSSLKSGLLSQAIVDFLTPLLQSDFIECLEKPIRLYDQKAEIFTGHLSLF
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ANFMSKFDEKIPINLHTSLKLATSCKLLLENFEFQVLQKSNYDLSNTIKVDLGSDVKLQE
HHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCHHEEEECCCCCCCCEEEEECCCCCEEEE
LTLESGQLICQGSLIVKS
EEECCCCEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA