| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475030
Identifier: 113475030
GI number: 113475030
Start: 1966978
End: 1967166
Strand: Direct
Name: 113475030
Synonym: Tery_1287
Alternate gene names: NA
Gene position: 1966978-1967166 (Clockwise)
Preceding gene: 113475029
Following gene: 113475031
Centisome position: 25.38
GC content: 41.8
Gene sequence:
>189_bases GTGGCTCAATGTTGTGGTATTCAGACTGATTTGGGGGTAATACAGAAATCAGGTATTCGAGACTCTATGGTAACTCGTGC TGCTTTTTTGTCTGACGAGTTTCACCAGATTCGCTTTGTTTATATCCCTAAACATACTTCTTGGCTGAATCAAATTGAGT GTTGGTTCTCTATTTGGGCCAGGGGTTGA
Upstream 100 bases:
>100_bases AACACATTGAACAGACTATCCATACTGAATTCTGATGGAGGATGAATTTTTCGGATTAGAGCAACTCAATACTCATAAAT CTGAATGATTAGTCCGTCAA
Downstream 100 bases:
>100_bases CTCCGGCGTAGTAGTTTCTCTTCCACCTCAGAGCTCAAGCAGAAGATACTAAATTTTATTGACTATTTCAACTGTACTCT AGCCAGACCTTGTTGCTGGA
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 62; Mature: 61
Protein sequence:
>62_residues MAQCCGIQTDLGVIQKSGIRDSMVTRAAFLSDEFHQIRFVYIPKHTSWLNQIECWFSIWARG
Sequences:
>Translated_62_residues MAQCCGIQTDLGVIQKSGIRDSMVTRAAFLSDEFHQIRFVYIPKHTSWLNQIECWFSIWARG >Mature_61_residues AQCCGIQTDLGVIQKSGIRDSMVTRAAFLSDEFHQIRFVYIPKHTSWLNQIECWFSIWARG
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7191; Mature: 7060
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 8.1 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQCCGIQTDLGVIQKSGIRDSMVTRAAFLSDEFHQIRFVYIPKHTSWLNQIECWFSIWA CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCC RG CC >Mature Secondary Structure AQCCGIQTDLGVIQKSGIRDSMVTRAAFLSDEFHQIRFVYIPKHTSWLNQIECWFSIWA CCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCC RG CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA