| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474999
Identifier: 113474999
GI number: 113474999
Start: 1917668
End: 1919488
Strand: Reverse
Name: 113474999
Synonym: Tery_1237
Alternate gene names: NA
Gene position: 1919488-1917668 (Counterclockwise)
Preceding gene: 113475000
Following gene: 113474998
Centisome position: 24.77
GC content: 36.79
Gene sequence:
>1821_bases TTGATAGCTAAATATATTCGTCTCATTAAAGACGAAGCTCTCAAGGAAATTAAAAACAGTACCTCTGGAGAATTAAAGGA TCAAGAAATTAGGTGGTGTTTAAGTATACCAGCAATTTGGAAAAATGAAGATAAAGATTTGATGCGTCGTGCGGCACGAA AAGCTGGATTAATTAATTCCTCTGATGATGAAGCTGAACGTCTTTTCCTTGTATTAGAGCCAGAAGCAGCTGCTATCTTT TGCCAAGAGGAAGATAAAAATGCACTAACACCTGGTAATAAGATTATGATAATTGACTGCGGTGGCGGTACAGTCGATAT CACTGTTCATAAGTTGGTCAAAGATGGTGGACTTGATGAGGTAGCTCCTGGGACAGGTGGTCCTTTTGGCTCGATATATG TAGATAAAAGCTTTCAAGAATATTTGACCGAAAAACTCTCTGCTGAAATGGTGAAGGGTTTCCATGATCAGGATCCTGTT GGTTATTTGAAGATGATGGAGGAGTGGGAACGAACAAAGTGCAACTTCGATCCAGAAACTAGTGGTGATGTTATTTACTT TAACATTCCAACCAGACTTTACAATTTTATCTCCAAGCGTAAAGCAAAAATCCTCGAACAGCTAGCTGATGAACAAAACG GGGATGATGAAAATATTCATCTAAGCTACTCAACAATGGAAAATATTTTCCGTATCACTGTTCATAAGTTGGTCAAAGAT GGTGGACTTGATGAGGTAGCTCCTGGGACAGGTGGTCCTTTTGGCTCGATATATGTAGATAAAAGCTTTCAAGAATATTT GACCGAAAAACTCTCTGCTGAAATGGTGAAGGGTTTCCATGATCAGGAGCCTGTTGATTATTTGAAGATGATGGAGGAGT GGGAACGAACAAAGTGCAACTTCGATCCAGAAACTAGTGGTGATGTTATTTACTTTAACATTCCAACCAGACTTTACAAT TTTATCTCCAAGCGTAAAGCAAAAATCCTCGAACAGCTAGCTGATGAACAAAACGGGGATGATAAAAATATTCATCTAAG TTACTCAACAATGGAAAATATTTTCCGTCCAACTTTAGATGGTTTAGTTTCAACAGTTAAAAATCAATTTAAAGAGTTGG GAGATGAAGAAGTTGACATCATCTTTCTTGTTGGCGGATTTTCTACTTCCCCTGTGCTCCGGCAGCGAATTAAAAAAGAG TTTGGAAGCAAGGCCAAGAAAATTGTTATGCCTCCACGTCCGGGTGTTGCCATTTTAAAGGGGGCAGCATCTTTCGGTGT TGCTCCAGGCATCATTCGCGCCAGGCGGAGTCGATTAACCTATGGTGTTTCATCCTCTAGGGAATTTAATCAATTTAAGG ATACAATTATAAGTCAAAAACAGCAAAGTGATAATCCCGAAAATTGGGAAAATTGCTTGAGAGTATATAAAAATAATAAT GATTTTTTGAATTGGTTATTAAATAATTTTGATATTCAGTATTCCAATCATAATCATGAACAAGAAAAACAGCAAATTAA CTCTCTTAAAAATGCACTTAAAAATCCTAAAAAACTTCTAGAAAAATTTTATAATATCTACCTAATGATTGTAGAGCCAA AAAAAAGATACAACCAAAAACACAAGCAAGAGCTGAAGGAAACAGTATACTTGCTAAACCAAAAAATTCAAAGCCAAGAA ATACTAATAAATGAGCTTAAGAGGGAAAATGAAAAACTCCGTAAATTGAAAAGTTCTCTTTTAAGTAAGTTAAGCGATCG TGATCGCGACACAAGTAACACAATTACTTCTGATGAATCACGCCCCCAAAGAGATGTTTGA
Upstream 100 bases:
>100_bases TACCCGTAACTTTAAAATGGAGTTACATTCTGGTAAAAAAGACGAAAGTTGACCTTATGTCATTAATAAAAATAACGGAG AAAAAATTTATGTTATTGAC
Downstream 100 bases:
>100_bases ACTGACAAATTTATCCAACTTAAAAATCAAGAAATCACAAAAGTTAGTCAAGAAATATTCAATCATTTATCTCAAATAAA TTCAGATTTAAAAGCTCATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 606
Protein sequence:
>606_residues MIAKYIRLIKDEALKEIKNSTSGELKDQEIRWCLSIPAIWKNEDKDLMRRAARKAGLINSSDDEAERLFLVLEPEAAAIF CQEEDKNALTPGNKIMIIDCGGGTVDITVHKLVKDGGLDEVAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQDPV GYLKMMEEWERTKCNFDPETSGDVIYFNIPTRLYNFISKRKAKILEQLADEQNGDDENIHLSYSTMENIFRITVHKLVKD GGLDEVAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQEPVDYLKMMEEWERTKCNFDPETSGDVIYFNIPTRLYN FISKRKAKILEQLADEQNGDDKNIHLSYSTMENIFRPTLDGLVSTVKNQFKELGDEEVDIIFLVGGFSTSPVLRQRIKKE FGSKAKKIVMPPRPGVAILKGAASFGVAPGIIRARRSRLTYGVSSSREFNQFKDTIISQKQQSDNPENWENCLRVYKNNN DFLNWLLNNFDIQYSNHNHEQEKQQINSLKNALKNPKKLLEKFYNIYLMIVEPKKRYNQKHKQELKETVYLLNQKIQSQE ILINELKRENEKLRKLKSSLLSKLSDRDRDTSNTITSDESRPQRDV
Sequences:
>Translated_606_residues MIAKYIRLIKDEALKEIKNSTSGELKDQEIRWCLSIPAIWKNEDKDLMRRAARKAGLINSSDDEAERLFLVLEPEAAAIF CQEEDKNALTPGNKIMIIDCGGGTVDITVHKLVKDGGLDEVAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQDPV GYLKMMEEWERTKCNFDPETSGDVIYFNIPTRLYNFISKRKAKILEQLADEQNGDDENIHLSYSTMENIFRITVHKLVKD GGLDEVAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQEPVDYLKMMEEWERTKCNFDPETSGDVIYFNIPTRLYN FISKRKAKILEQLADEQNGDDKNIHLSYSTMENIFRPTLDGLVSTVKNQFKELGDEEVDIIFLVGGFSTSPVLRQRIKKE FGSKAKKIVMPPRPGVAILKGAASFGVAPGIIRARRSRLTYGVSSSREFNQFKDTIISQKQQSDNPENWENCLRVYKNNN DFLNWLLNNFDIQYSNHNHEQEKQQINSLKNALKNPKKLLEKFYNIYLMIVEPKKRYNQKHKQELKETVYLLNQKIQSQE ILINELKRENEKLRKLKSSLLSKLSDRDRDTSNTITSDESRPQRDV >Mature_606_residues MIAKYIRLIKDEALKEIKNSTSGELKDQEIRWCLSIPAIWKNEDKDLMRRAARKAGLINSSDDEAERLFLVLEPEAAAIF CQEEDKNALTPGNKIMIIDCGGGTVDITVHKLVKDGGLDEVAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQDPV GYLKMMEEWERTKCNFDPETSGDVIYFNIPTRLYNFISKRKAKILEQLADEQNGDDENIHLSYSTMENIFRITVHKLVKD GGLDEVAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQEPVDYLKMMEEWERTKCNFDPETSGDVIYFNIPTRLYN FISKRKAKILEQLADEQNGDDKNIHLSYSTMENIFRPTLDGLVSTVKNQFKELGDEEVDIIFLVGGFSTSPVLRQRIKKE FGSKAKKIVMPPRPGVAILKGAASFGVAPGIIRARRSRLTYGVSSSREFNQFKDTIISQKQQSDNPENWENCLRVYKNNN DFLNWLLNNFDIQYSNHNHEQEKQQINSLKNALKNPKKLLEKFYNIYLMIVEPKKRYNQKHKQELKETVYLLNQKIQSQE ILINELKRENEKLRKLKSSLLSKLSDRDRDTSNTITSDESRPQRDV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31317303, Length=457, Percent_Identity=26.0393873085339, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI119874213, Length=219, Percent_Identity=30.1369863013699, Blast_Score=119, Evalue=6e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69644; Mature: 69644
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAKYIRLIKDEALKEIKNSTSGELKDQEIRWCLSIPAIWKNEDKDLMRRAARKAGLINS CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEECCHHHCCCCHHHHHHHHHHCCCCCC SDDEAERLFLVLEPEAAAIFCQEEDKNALTPGNKIMIIDCGGGTVDITVHKLVKDGGLDE CCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHCCCCCC VAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQDPVGYLKMMEEWERTKCNFDPET CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC SGDVIYFNIPTRLYNFISKRKAKILEQLADEQNGDDENIHLSYSTMENIFRITVHKLVKD CCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC GGLDEVAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQEPVDYLKMMEEWERTKCN CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC FDPETSGDVIYFNIPTRLYNFISKRKAKILEQLADEQNGDDKNIHLSYSTMENIFRPTLD CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHH GLVSTVKNQFKELGDEEVDIIFLVGGFSTSPVLRQRIKKEFGSKAKKIVMPPRPGVAILK HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHEE GAASFGVAPGIIRARRSRLTYGVSSSREFNQFKDTIISQKQQSDNPENWENCLRVYKNNN CCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC DFLNWLLNNFDIQYSNHNHEQEKQQINSLKNALKNPKKLLEKFYNIYLMIVEPKKRYNQK HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCEEEEEECCHHHHCHH HKQELKETVYLLNQKIQSQEILINELKRENEKLRKLKSSLLSKLSDRDRDTSNTITSDES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC RPQRDV CCCCCC >Mature Secondary Structure MIAKYIRLIKDEALKEIKNSTSGELKDQEIRWCLSIPAIWKNEDKDLMRRAARKAGLINS CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEECCHHHCCCCHHHHHHHHHHCCCCCC SDDEAERLFLVLEPEAAAIFCQEEDKNALTPGNKIMIIDCGGGTVDITVHKLVKDGGLDE CCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHCCCCCC VAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQDPVGYLKMMEEWERTKCNFDPET CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC SGDVIYFNIPTRLYNFISKRKAKILEQLADEQNGDDENIHLSYSTMENIFRITVHKLVKD CCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC GGLDEVAPGTGGPFGSIYVDKSFQEYLTEKLSAEMVKGFHDQEPVDYLKMMEEWERTKCN CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC FDPETSGDVIYFNIPTRLYNFISKRKAKILEQLADEQNGDDKNIHLSYSTMENIFRPTLD CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHH GLVSTVKNQFKELGDEEVDIIFLVGGFSTSPVLRQRIKKEFGSKAKKIVMPPRPGVAILK HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHEE GAASFGVAPGIIRARRSRLTYGVSSSREFNQFKDTIISQKQQSDNPENWENCLRVYKNNN CCHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC DFLNWLLNNFDIQYSNHNHEQEKQQINSLKNALKNPKKLLEKFYNIYLMIVEPKKRYNQK HHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCEEEEEECCHHHHCHH HKQELKETVYLLNQKIQSQEILINELKRENEKLRKLKSSLLSKLSDRDRDTSNTITSDES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC RPQRDV CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA