| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474982
Identifier: 113474982
GI number: 113474982
Start: 1889069
End: 1889311
Strand: Direct
Name: 113474982
Synonym: Tery_1215
Alternate gene names: NA
Gene position: 1889069-1889311 (Clockwise)
Preceding gene: 113474980
Following gene: 113474988
Centisome position: 24.37
GC content: 39.51
Gene sequence:
>243_bases GTGGGAACTACTCGAATCTCTGCTACCGAAACCTCTACTCAACGAGGGCCAAAACCAAATGCTAATCTCATAGAAGTAGT AAATAGTATATTCTATATCCTTTACTCTGATTGTCATTGGCGTTCTTTGCCCCAGGATCTACCACCTTGGCAAACTGTGT CAACAAAATTTTCTAAATGCAACGGATATGTTGTTTGGGAACAAATCAATCATACTTTATGGCGAGAGACAAGAGTCCAA TAA
Upstream 100 bases:
>100_bases GGCCATGAAAAAGTATTGAAGGTAGGAAAATAAAAAAAACAATGATCACTGTCAAATAAATGTCGCGAAAATCTTTAGCC AAGGCTCTAAGCCCTCGCCA
Downstream 100 bases:
>100_bases GCAAGACTTAATGGAGAACCTACTGCAGCCATTGTTGATTCTCGTAGGGTAAAAACAACAGCAAAAAGGGGGAAGTATAT GGTTATGATGGTGGTAAAAA
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 80; Mature: 79
Protein sequence:
>80_residues MGTTRISATETSTQRGPKPNANLIEVVNSIFYILYSDCHWRSLPQDLPPWQTVSTKFSKCNGYVVWEQINHTLWRETRVQ
Sequences:
>Translated_80_residues MGTTRISATETSTQRGPKPNANLIEVVNSIFYILYSDCHWRSLPQDLPPWQTVSTKFSKCNGYVVWEQINHTLWRETRVQ >Mature_79_residues GTTRISATETSTQRGPKPNANLIEVVNSIFYILYSDCHWRSLPQDLPPWQTVSTKFSKCNGYVVWEQINHTLWRETRVQ
Specific function: Unknown
COG id: COG3293
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9327; Mature: 9195
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTTRISATETSTQRGPKPNANLIEVVNSIFYILYSDCHWRSLPQDLPPWQTVSTKFSKC CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC NGYVVWEQINHTLWRETRVQ CCEEEHHHHCHHHHHHHCCC >Mature Secondary Structure GTTRISATETSTQRGPKPNANLIEVVNSIFYILYSDCHWRSLPQDLPPWQTVSTKFSKC CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC NGYVVWEQINHTLWRETRVQ CCEEEHHHHCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA