| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is wcaE [C]
Identifier: 113474970
GI number: 113474970
Start: 1875929
End: 1876612
Strand: Direct
Name: wcaE [C]
Synonym: Tery_1201
Alternate gene names: 113474970
Gene position: 1875929-1876612 (Clockwise)
Preceding gene: 113474967
Following gene: 113474972
Centisome position: 24.21
GC content: 34.06
Gene sequence:
>684_bases ATGAGCAGTATTTCGATTATTATTCCGGTGTTAAATGAAGTTGGGACGATCGCCCAAACTATTTCCACAGCTCAAACAGG AAAAAATGTAGAAATAATTGTAGTTGACGGTGGCAGTAATGATGGTACTATTGAAGTTGTTAAGTCTTTAAATATTAAAC TTATTTATTCCCTCCCTGGTCGTAGTATTCAAATGAATTTTGGGGCAAAGTTAGCAACGGGAAATATTCTTTTGTTTCTT CATGGAGATACTTTTTTACCATTAAATTTTGACGAATTATTAAGAGAAATCATAGTTCAACCGAATATTATTGCAGGTGC GTTTGAATTAGGTATTAGAGGAAAAAAAAGAATTTTACGAATAGTCGAGAGCATAGTAAATTGGCGATCGCGTTATTTAC AAATGCCTTATGGAGACCAAGGAATTTTTCTTTCGGCTCAAGTATTTGAACAAATTGGTTGCTTCCCAGAAATACCAATT ATGGAAGATTTTGAGTTGATCCAAAAGTTAAGAAAAAGAGGACGAATTGGAATTATATCAAAACCAGTATTAACCTCTGA TCGTCGGTGGCAAAAGTTGGGGATATTGAAAACGACTCTAATTAATCAAGTAATAATTATTGCTTACTTGCTTGGGTTGC CTCCAAAAACATTAGCACAATGGTATCGTAGTCATCTGAAGTAA
Upstream 100 bases:
>100_bases ATATATTTAAAGGTAACATAGCTATATAACTAATCGCTAAGTGCTGTTAGCGCAGTATTTTAGACAAAATGGTTATATAA ATTCCCTTACTAAAAAATTG
Downstream 100 bases:
>100_bases GACTACCTGATTAAATATCAAAGTATTGACTGATATTGGCTAAAGTTTTTTTCTGTCTAAAAAAAAGTACCTGTATCAGA TCTAAAACCCTCACATTTTC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: Glycosyl Transferase Group 2 Family Protein; Glycosyl Transferase; Glycosyltransferase; Cell Wall Biosynthesis Glycosyltransferase; Glycosyltransferase Involved In Cell Wall Biogenesis; Family 2 Glycosyl Transferase; Glycosyl Transferase Family 2 Protein; Cell Wall Biogenesis Glycosyltransferase; Glycosyl Transferase-Related Protein; Glycosyltransferase Group 2 Family Protein; Glycosyl Transferase Group 2 Family; Glycosyltransferases Involved In Cell Wall Biogenesis
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MSSISIIIPVLNEVGTIAQTISTAQTGKNVEIIVVDGGSNDGTIEVVKSLNIKLIYSLPGRSIQMNFGAKLATGNILLFL HGDTFLPLNFDELLREIIVQPNIIAGAFELGIRGKKRILRIVESIVNWRSRYLQMPYGDQGIFLSAQVFEQIGCFPEIPI MEDFELIQKLRKRGRIGIISKPVLTSDRRWQKLGILKTTLINQVIIIAYLLGLPPKTLAQWYRSHLK
Sequences:
>Translated_227_residues MSSISIIIPVLNEVGTIAQTISTAQTGKNVEIIVVDGGSNDGTIEVVKSLNIKLIYSLPGRSIQMNFGAKLATGNILLFL HGDTFLPLNFDELLREIIVQPNIIAGAFELGIRGKKRILRIVESIVNWRSRYLQMPYGDQGIFLSAQVFEQIGCFPEIPI MEDFELIQKLRKRGRIGIISKPVLTSDRRWQKLGILKTTLINQVIIIAYLLGLPPKTLAQWYRSHLK >Mature_226_residues SSISIIIPVLNEVGTIAQTISTAQTGKNVEIIVVDGGSNDGTIEVVKSLNIKLIYSLPGRSIQMNFGAKLATGNILLFLH GDTFLPLNFDELLREIIVQPNIIAGAFELGIRGKKRILRIVESIVNWRSRYLQMPYGDQGIFLSAQVFEQIGCFPEIPIM EDFELIQKLRKRGRIGIISKPVLTSDRRWQKLGILKTTLINQVIIIAYLLGLPPKTLAQWYRSHLK
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25439; Mature: 25307
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSISIIIPVLNEVGTIAQTISTAQTGKNVEIIVVDGGSNDGTIEVVKSLNIKLIYSLPG CCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCCEEEEEECCC RSIQMNFGAKLATGNILLFLHGDTFLPLNFDELLREIIVQPNIIAGAFELGIRGKKRILR CEEEEECCCEEECCCEEEEEECCEEECCCHHHHHHHHHCCCCCEEHHHHHCCCCHHHHHH IVESIVNWRSRYLQMPYGDQGIFLSAQVFEQIGCFPEIPIMEDFELIQKLRKRGRIGIIS HHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE KPVLTSDRRWQKLGILKTTLINQVIIIAYLLGLPPKTLAQWYRSHLK CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure SSISIIIPVLNEVGTIAQTISTAQTGKNVEIIVVDGGSNDGTIEVVKSLNIKLIYSLPG CCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCCEEEEEECCC RSIQMNFGAKLATGNILLFLHGDTFLPLNFDELLREIIVQPNIIAGAFELGIRGKKRILR CEEEEECCCEEECCCEEEEEECCEEECCCHHHHHHHHHCCCCCEEHHHHHCCCCHHHHHH IVESIVNWRSRYLQMPYGDQGIFLSAQVFEQIGCFPEIPIMEDFELIQKLRKRGRIGIIS HHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE KPVLTSDRRWQKLGILKTTLINQVIIIAYLLGLPPKTLAQWYRSHLK CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA