| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474955
Identifier: 113474955
GI number: 113474955
Start: 1855867
End: 1857660
Strand: Reverse
Name: 113474955
Synonym: Tery_1185
Alternate gene names: NA
Gene position: 1857660-1855867 (Counterclockwise)
Preceding gene: 113474956
Following gene: 113474954
Centisome position: 23.97
GC content: 33.05
Gene sequence:
>1794_bases ATGTGGAAAAGCATATATAGTTGGAAAAGCACATACAGTTTATTGCTGTCTTTGGTATTAATGTCTGGTTCTTTAGTGGC TTGTGTACAAACAGATCCAAACACAATACTTACTAGTCCTTCGATAACATCAAGTCCTTTAAATCCAGATCAGGGAAATT TAGATCAGGAAAATTTAAAGAACAGCTTTGATGATATTCAAAAAACAAACGATGAATTTCAAACATTATTAGACGATTTT ATTAAGGACATTGCTGCAGTAAGAGAGGGTTCCAAAAATAGGGAATCAGTAAATAGTTCTAAGGTTAATGAAAAACTAAT ACAACTGGAAGAAAAAGTTAATACGTATAAAAATCAAATTTCGCAAATAAGAAATCAAGAAAATTTAGAGCAAAATTTTA ATAGCATAAATCAAAATATTAGTAACATTAAAGAAATAACTGAAAAATTAAAAGGTGGATTAGGCAAAGACAAAATTGGT GAAGTCCAACTAAATTTGCAGATTATTACAAATCCGGAAGTATCTTATTTTGGACGCTTAGGTCCAGATACGCAAAGTAA AATAAATGAGTCATTGACAGAAAACAGCAAACAGCTAAAAGCTAAAATTATCGATCTTGGTCAAGTTACTGGTTTACCTT CATCTGTTACCCTCGATAAAGATGATGACAAAGAATTGGCTAGAAAAATAGCTGATTTGGAAGCAAGAAATAATGAATTA GCCGCTATAGCTAAGAAGAATGAGGAAGAAATTAAGAATTTAAACTCTGAAAAACAAGAAATTTATAATCAATTAAATCA GTTTCAAAGTAGACTAAAATTAGAGACATTTGTTGTCATAATAGTGCTGGTAATAGCTGTATTTTTAAGTGGTTTATGTG TTTATATTTGGCAAGATTGGAGGAGAATAAAGCTGCTTTTGAAAAGATATAACAAAGCTTATACAAATACCAAACAACCG AATAATGGTGTTAATCAAACTGGTGATTTAGATACTCAAGAACTTGTTTATGAAGTAGACGATAAAGTAGAAGATGCTTA TGATAAATTAGAAAAAATGTCTAAAATCTGGGAGAATGAAGCGAAAAAAATACAAAGTCAAATATACTATCTCCAACAAA ATCAGCAAGTCAAGACTCCAGGTAATAATGTCGATAATAGAAAGTTGATTGTTCAAGTAGTAAATGAGAAAATAGGGGAG ATTTATAGGCAATTACAACAAGAAATTGATCAAAGATGGGATATTGAATCAAGGAACCTACAAAATCAAATAAACCAGCT CCAACAAAATCAGAAACTAAGGACTTCAGACAATGTAGCTGGAGTTCACAGAGAATCTCGAATAACAACCAATCATTTAA CTAGCCAAGTAACACCAGTACCTCAAATGAACCCACAAATACCTACCCATCAATATTTTGGGTCGTCAGATCTGCAATTG ATATCAATGTATCAGCACGACGCCCGTTCTTTGTTAAAAAATGCTATAGAGGTCTCGGAAACAGAACAAAGCATTGACCA ACGTCGTCTCGGTGGCGGTCAAGGAGCAATTCTTCAGAAAGTTCGCAGGGGAAACTATTGTATATTAAACGAGGGTGGGG TTGATTACATGGTTCCTAAAAATAACATCAAGATTAACGAGCATAGCTTGGAAACAGTTAAAAATTTATTTGAATGTCAG GGATATAGGTCTGGATACTCCGGGTTTCAACTGATAAAACCAGCGAGAGTGTCTGCTATTTCCAGAGGTGAAACTTGGCA GCTTGTAGAACTTGGAGTACTGCAATTTTATTAA
Upstream 100 bases:
>100_bases CTGCTAAAGTTTCTTCTATTGGAGAAGAAAAGTGGCAACTGTCCGAGCCAGGGAAACTGGAATTTATTGGTTAATTTATT GAACTAAGAGGTTAGTTATC
Downstream 100 bases:
>100_bases TGGGCAATGGAACCTTTTGGGGAAGTCAATTCTCAGTTAGATAATTGCGCAGTGAAAAGGATACGATAGTTTATTAGTTC GTTTATTAGACTTCTCCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 597; Mature: 597
Protein sequence:
>597_residues MWKSIYSWKSTYSLLLSLVLMSGSLVACVQTDPNTILTSPSITSSPLNPDQGNLDQENLKNSFDDIQKTNDEFQTLLDDF IKDIAAVREGSKNRESVNSSKVNEKLIQLEEKVNTYKNQISQIRNQENLEQNFNSINQNISNIKEITEKLKGGLGKDKIG EVQLNLQIITNPEVSYFGRLGPDTQSKINESLTENSKQLKAKIIDLGQVTGLPSSVTLDKDDDKELARKIADLEARNNEL AAIAKKNEEEIKNLNSEKQEIYNQLNQFQSRLKLETFVVIIVLVIAVFLSGLCVYIWQDWRRIKLLLKRYNKAYTNTKQP NNGVNQTGDLDTQELVYEVDDKVEDAYDKLEKMSKIWENEAKKIQSQIYYLQQNQQVKTPGNNVDNRKLIVQVVNEKIGE IYRQLQQEIDQRWDIESRNLQNQINQLQQNQKLRTSDNVAGVHRESRITTNHLTSQVTPVPQMNPQIPTHQYFGSSDLQL ISMYQHDARSLLKNAIEVSETEQSIDQRRLGGGQGAILQKVRRGNYCILNEGGVDYMVPKNNIKINEHSLETVKNLFECQ GYRSGYSGFQLIKPARVSAISRGETWQLVELGVLQFY
Sequences:
>Translated_597_residues MWKSIYSWKSTYSLLLSLVLMSGSLVACVQTDPNTILTSPSITSSPLNPDQGNLDQENLKNSFDDIQKTNDEFQTLLDDF IKDIAAVREGSKNRESVNSSKVNEKLIQLEEKVNTYKNQISQIRNQENLEQNFNSINQNISNIKEITEKLKGGLGKDKIG EVQLNLQIITNPEVSYFGRLGPDTQSKINESLTENSKQLKAKIIDLGQVTGLPSSVTLDKDDDKELARKIADLEARNNEL AAIAKKNEEEIKNLNSEKQEIYNQLNQFQSRLKLETFVVIIVLVIAVFLSGLCVYIWQDWRRIKLLLKRYNKAYTNTKQP NNGVNQTGDLDTQELVYEVDDKVEDAYDKLEKMSKIWENEAKKIQSQIYYLQQNQQVKTPGNNVDNRKLIVQVVNEKIGE IYRQLQQEIDQRWDIESRNLQNQINQLQQNQKLRTSDNVAGVHRESRITTNHLTSQVTPVPQMNPQIPTHQYFGSSDLQL ISMYQHDARSLLKNAIEVSETEQSIDQRRLGGGQGAILQKVRRGNYCILNEGGVDYMVPKNNIKINEHSLETVKNLFECQ GYRSGYSGFQLIKPARVSAISRGETWQLVELGVLQFY >Mature_597_residues MWKSIYSWKSTYSLLLSLVLMSGSLVACVQTDPNTILTSPSITSSPLNPDQGNLDQENLKNSFDDIQKTNDEFQTLLDDF IKDIAAVREGSKNRESVNSSKVNEKLIQLEEKVNTYKNQISQIRNQENLEQNFNSINQNISNIKEITEKLKGGLGKDKIG EVQLNLQIITNPEVSYFGRLGPDTQSKINESLTENSKQLKAKIIDLGQVTGLPSSVTLDKDDDKELARKIADLEARNNEL AAIAKKNEEEIKNLNSEKQEIYNQLNQFQSRLKLETFVVIIVLVIAVFLSGLCVYIWQDWRRIKLLLKRYNKAYTNTKQP NNGVNQTGDLDTQELVYEVDDKVEDAYDKLEKMSKIWENEAKKIQSQIYYLQQNQQVKTPGNNVDNRKLIVQVVNEKIGE IYRQLQQEIDQRWDIESRNLQNQINQLQQNQKLRTSDNVAGVHRESRITTNHLTSQVTPVPQMNPQIPTHQYFGSSDLQL ISMYQHDARSLLKNAIEVSETEQSIDQRRLGGGQGAILQKVRRGNYCILNEGGVDYMVPKNNIKINEHSLETVKNLFECQ GYRSGYSGFQLIKPARVSAISRGETWQLVELGVLQFY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68281; Mature: 68281
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWKSIYSWKSTYSLLLSLVLMSGSLVACVQTDPNTILTSPSITSSPLNPDQGNLDQENLK CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHHH NSFDDIQKTNDEFQTLLDDFIKDIAAVREGSKNRESVNSSKVNEKLIQLEEKVNTYKNQI HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SQIRNQENLEQNFNSINQNISNIKEITEKLKGGLGKDKIGEVQLNLQIITNPEVSYFGRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCHHHHCCC GPDTQSKINESLTENSKQLKAKIIDLGQVTGLPSSVTLDKDDDKELARKIADLEARNNEL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC AAIAKKNEEEIKNLNSEKQEIYNQLNQFQSRLKLETFVVIIVLVIAVFLSGLCVYIWQDW HHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRIKLLLKRYNKAYTNTKQPNNGVNQTGDLDTQELVYEVDDKVEDAYDKLEKMSKIWENE HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKKIQSQIYYLQQNQQVKTPGNNVDNRKLIVQVVNEKIGEIYRQLQQEIDQRWDIESRNL HHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH QNQINQLQQNQKLRTSDNVAGVHRESRITTNHLTSQVTPVPQMNPQIPTHQYFGSSDLQL HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCHHH ISMYQHDARSLLKNAIEVSETEQSIDQRRLGGGQGAILQKVRRGNYCILNEGGVDYMVPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCEEEEECC NNIKINEHSLETVKNLFECQGYRSGYSGFQLIKPARVSAISRGETWQLVELGVLQFY CCCEECHHHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHCCCCCCHHHHHHHHHCC >Mature Secondary Structure MWKSIYSWKSTYSLLLSLVLMSGSLVACVQTDPNTILTSPSITSSPLNPDQGNLDQENLK CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHHH NSFDDIQKTNDEFQTLLDDFIKDIAAVREGSKNRESVNSSKVNEKLIQLEEKVNTYKNQI HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SQIRNQENLEQNFNSINQNISNIKEITEKLKGGLGKDKIGEVQLNLQIITNPEVSYFGRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCHHHHCCC GPDTQSKINESLTENSKQLKAKIIDLGQVTGLPSSVTLDKDDDKELARKIADLEARNNEL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC AAIAKKNEEEIKNLNSEKQEIYNQLNQFQSRLKLETFVVIIVLVIAVFLSGLCVYIWQDW HHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRIKLLLKRYNKAYTNTKQPNNGVNQTGDLDTQELVYEVDDKVEDAYDKLEKMSKIWENE HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKKIQSQIYYLQQNQQVKTPGNNVDNRKLIVQVVNEKIGEIYRQLQQEIDQRWDIESRNL HHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH QNQINQLQQNQKLRTSDNVAGVHRESRITTNHLTSQVTPVPQMNPQIPTHQYFGSSDLQL HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCHHH ISMYQHDARSLLKNAIEVSETEQSIDQRRLGGGQGAILQKVRRGNYCILNEGGVDYMVPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCEEEEECC NNIKINEHSLETVKNLFECQGYRSGYSGFQLIKPARVSAISRGETWQLVELGVLQFY CCCEECHHHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA