| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474942
Identifier: 113474942
GI number: 113474942
Start: 1829938
End: 1830477
Strand: Reverse
Name: 113474942
Synonym: Tery_1169
Alternate gene names: NA
Gene position: 1830477-1829938 (Counterclockwise)
Preceding gene: 113474943
Following gene: 113474938
Centisome position: 23.62
GC content: 37.04
Gene sequence:
>540_bases ATGAGTATAGAAAAAATTGTTGAACAAGCTCTACAAGATGGTTATTTAACTCCTTCTATGGAAGCAGAAGTAGGACGAAT TTGTAATACAGCTTCTGAATTGTCTATTGAGGAGTATATGTCCCTTGATCGTTTAATGGGAGCTTTATTAACAGGAGAAG TAGTTGTTTTACCTCGCAAACAATTTATTAATGTGATGGAAGAGTTAGTTCTATCTGAGGCGATCGCACGAGTAGCAGAG AATGAAGGGAGTAGCGATCAAACTCTTGATGTGGGAGACATTGCAGCTTATGCTTTAAATAGACTCCCTCCTTTGTATGC GACTACTGAAGAAGGTGCTCAGTTTCAAAGGTCTAAAGCTAAGGATGAGCTTCAACATTTGATTTCTAAACAGGTAAGTG AAGCTATCGATCAGAATATTACTCGAAAACCAATTCACTCTAAAGTTTTGAGCAGTTTTTCTAATGATGTGAGCTCACAA CTAAGTAGCTTGCTCAAATCTATGGCTAACGAATTTGAAGATACAACTCCTAATTCATAA
Upstream 100 bases:
>100_bases AAACTCATCCCTGACTAAATTTCAGAATTTAGTAATGTCTGCTGAAAAATATTCGACTGCTATATTAGACAGTTATTATA AATAAACTTACATAAAAGTT
Downstream 100 bases:
>100_bases AATGCGAGGCGAGAGGTAAGGCAAGAAACAAAAGCCTTCAAAGGATTATTTTTTCAATCTTCTACATTTTCTAATACAAG GTCAAGCTACAGTTAGGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MSIEKIVEQALQDGYLTPSMEAEVGRICNTASELSIEEYMSLDRLMGALLTGEVVVLPRKQFINVMEELVLSEAIARVAE NEGSSDQTLDVGDIAAYALNRLPPLYATTEEGAQFQRSKAKDELQHLISKQVSEAIDQNITRKPIHSKVLSSFSNDVSSQ LSSLLKSMANEFEDTTPNS
Sequences:
>Translated_179_residues MSIEKIVEQALQDGYLTPSMEAEVGRICNTASELSIEEYMSLDRLMGALLTGEVVVLPRKQFINVMEELVLSEAIARVAE NEGSSDQTLDVGDIAAYALNRLPPLYATTEEGAQFQRSKAKDELQHLISKQVSEAIDQNITRKPIHSKVLSSFSNDVSSQ LSSLLKSMANEFEDTTPNS >Mature_178_residues SIEKIVEQALQDGYLTPSMEAEVGRICNTASELSIEEYMSLDRLMGALLTGEVVVLPRKQFINVMEELVLSEAIARVAEN EGSSDQTLDVGDIAAYALNRLPPLYATTEEGAQFQRSKAKDELQHLISKQVSEAIDQNITRKPIHSKVLSSFSNDVSSQL SSLLKSMANEFEDTTPNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19710; Mature: 19579
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIEKIVEQALQDGYLTPSMEAEVGRICNTASELSIEEYMSLDRLMGALLTGEVVVLPRK CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECHH QFINVMEELVLSEAIARVAENEGSSDQTLDVGDIAAYALNRLPPLYATTEEGAQFQRSKA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH KDELQHLISKQVSEAIDQNITRKPIHSKVLSSFSNDVSSQLSSLLKSMANEFEDTTPNS HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SIEKIVEQALQDGYLTPSMEAEVGRICNTASELSIEEYMSLDRLMGALLTGEVVVLPRK CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECHH QFINVMEELVLSEAIARVAENEGSSDQTLDVGDIAAYALNRLPPLYATTEEGAQFQRSKA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH KDELQHLISKQVSEAIDQNITRKPIHSKVLSSFSNDVSSQLSSLLKSMANEFEDTTPNS HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA