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The map label for this gene is amyB [H]

Identifier: 113474837

GI number: 113474837

Start: 1648441

End: 1649709

Strand: Direct

Name: amyB [H]

Synonym: Tery_1054

Alternate gene names: 113474837

Gene position: 1648441-1649709 (Clockwise)

Preceding gene: 113474829

Following gene: 113474838

Centisome position: 21.27

GC content: 37.04

Gene sequence:

>1269_bases
ATGACAGATACACCGACAAAACTACCATCACAGCTAAGGCCAGTAAAACCTGATGAGTGGATTGCAATATTTGTAGCTTT
AGGGACTTTTGGCAGCATATTTTTCTGGGCAACGACTGGAGAAAAGAATGGATTTAATCTACTTTCTAAACCCATGCTTT
CTACACCTCTATCTGAAAGTTTTGGTAGTTCCAATATTGCTTCTGGGAAGTCAATATTTAGCTTAGACATACCTCAACTT
AAGACTTCGACTGGTAAGTCAGGATCAAATTTTGAAGAGAGCTCTCAAAATCCTGAAGAATTAGGAACAAGTCTGGATAC
TTTGACTTCTATGACTGATCCTGTTGAGGATGATGAACCAAATCTTCAGAGTTTAGATCAAGTCAAGACTGAGACGAAGA
CAATACCTAAATTGTTTGAAGTGCTAAAAAAAATTAATCAAAAAGCTGCTCCGCCAGTTGCTGATAATTTGGGAATATTA
GACAGTGGAAAGATATTATCTAAATCTCCACCTACTATATCATCGGAAGTTACAGATGATCTAATAACAACTGCTCCTCT
ACCTGTAGCACCTTCTATTCCTACTCCAACAACAGAGTTACCCCAAGAAAAGGAAACTTCTTTGCCTTCAACAGCATTAC
CCTCTCCTGATATATCTTCTAGTAGCACGGTTAAATTTTCTGATGTTCCTAATAGTTTTTGGGCAAGTAGTTTTATTCAA
TCTTTGGTAGAACAGGATTTTATTGCTCAGATTAATAATGATCAGTTTGAGCCAGACAAACCTGTAACACGAGCTGAATT
TGCTGCTCAAATTGCCAAAGTATTTGAGGAAAAATCAGCTAAAAAATCTGTTGTATATAAAGATATCAAAGGAGATTCAA
CAGCTCAAAGTGAAATTCAAACATCTACTAAATCTGGTTTTTTAAGTGGGTATCCAGGGGATGTTTTTCGCCCAGAAGAA
AAAGTATCAAGGTTGCAGGTGTTAGTTTCTTTAGCTAGTGGCTTAAGTCTAGAAATTCCATCTGATCCTGATAGTGTTTT
AAGTGTTTACAAAGACACAACAGAAATACCTGATTGGGCTAAAGAAAAAGTAGCTGCTGCAACTGCTGCTGAATTAGTAG
TGAGCCATCCAGATGTAAAAATGCTGAATCCAAATCAACCTGCTACTCGTGCTGAAGTTGCAGCAGTTTTTTATCAAGCG
TTGGTAAAATTAGGGCAGGTAGAAAAGATTTCATCTGAGTATATTGTGAATCCGAAAAAGGAGAATTAG

Upstream 100 bases:

>100_bases
ATGGTTTAGTAGTCATTTTATTTGATTTTTGTGATACTCAACTTTTTAATTCCTAATATTTAGTTTAATCTAGATGTAGC
GCTATATAAATAGAGTAACC

Downstream 100 bases:

>100_bases
CTCTCTTTTTTGATGATAACTTGTTCCCTAAATAATTAATTTATTACAACCCGGTTTCTTCTGGAAACTGGGTTTTTAAT
CTCACAAATATTAGCTATTA

Product: hypothetical protein

Products: NA

Alternate protein names: Alpha-amylase/pullulanase; Pullulanase type II; Alpha-amylase; 1,4-alpha-D-glucan glucanohydrolase; Pullulanase; 1,4-alpha-D-glucan glucanohydrolase; Alpha-dextrin endo-1,6-alpha-glucosidase [H]

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MTDTPTKLPSQLRPVKPDEWIAIFVALGTFGSIFFWATTGEKNGFNLLSKPMLSTPLSESFGSSNIASGKSIFSLDIPQL
KTSTGKSGSNFEESSQNPEELGTSLDTLTSMTDPVEDDEPNLQSLDQVKTETKTIPKLFEVLKKINQKAAPPVADNLGIL
DSGKILSKSPPTISSEVTDDLITTAPLPVAPSIPTPTTELPQEKETSLPSTALPSPDISSSSTVKFSDVPNSFWASSFIQ
SLVEQDFIAQINNDQFEPDKPVTRAEFAAQIAKVFEEKSAKKSVVYKDIKGDSTAQSEIQTSTKSGFLSGYPGDVFRPEE
KVSRLQVLVSLASGLSLEIPSDPDSVLSVYKDTTEIPDWAKEKVAAATAAELVVSHPDVKMLNPNQPATRAEVAAVFYQA
LVKLGQVEKISSEYIVNPKKEN

Sequences:

>Translated_422_residues
MTDTPTKLPSQLRPVKPDEWIAIFVALGTFGSIFFWATTGEKNGFNLLSKPMLSTPLSESFGSSNIASGKSIFSLDIPQL
KTSTGKSGSNFEESSQNPEELGTSLDTLTSMTDPVEDDEPNLQSLDQVKTETKTIPKLFEVLKKINQKAAPPVADNLGIL
DSGKILSKSPPTISSEVTDDLITTAPLPVAPSIPTPTTELPQEKETSLPSTALPSPDISSSSTVKFSDVPNSFWASSFIQ
SLVEQDFIAQINNDQFEPDKPVTRAEFAAQIAKVFEEKSAKKSVVYKDIKGDSTAQSEIQTSTKSGFLSGYPGDVFRPEE
KVSRLQVLVSLASGLSLEIPSDPDSVLSVYKDTTEIPDWAKEKVAAATAAELVVSHPDVKMLNPNQPATRAEVAAVFYQA
LVKLGQVEKISSEYIVNPKKEN
>Mature_421_residues
TDTPTKLPSQLRPVKPDEWIAIFVALGTFGSIFFWATTGEKNGFNLLSKPMLSTPLSESFGSSNIASGKSIFSLDIPQLK
TSTGKSGSNFEESSQNPEELGTSLDTLTSMTDPVEDDEPNLQSLDQVKTETKTIPKLFEVLKKINQKAAPPVADNLGILD
SGKILSKSPPTISSEVTDDLITTAPLPVAPSIPTPTTELPQEKETSLPSTALPSPDISSSSTVKFSDVPNSFWASSFIQS
LVEQDFIAQINNDQFEPDKPVTRAEFAAQIAKVFEEKSAKKSVVYKDIKGDSTAQSEIQTSTKSGFLSGYPGDVFRPEEK
VSRLQVLVSLASGLSLEIPSDPDSVLSVYKDTTEIPDWAKEKVAAATAAELVVSHPDVKMLNPNQPATRAEVAAVFYQAL
VKLGQVEKISSEYIVNPKKEN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Note=It C-terminus may serve as an S-layer anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 SLH (S-layer homology) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006048
- InterPro:   IPR013784
- InterPro:   IPR008957
- InterPro:   IPR003961
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004185
- InterPro:   IPR006589
- InterPro:   IPR002044
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756
- InterPro:   IPR001119 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02903 Alpha-amylase_N; PF00395 SLH [H]

EC number: =3.2.1.1; =3.2.1.41 [H]

Molecular weight: Translated: 45576; Mature: 45444

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTPTKLPSQLRPVKPDEWIAIFVALGTFGSIFFWATTGEKNGFNLLSKPMLSTPLSES
CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCHHHH
FGSSNIASGKSIFSLDIPQLKTSTGKSGSNFEESSQNPEELGTSLDTLTSMTDPVEDDEP
CCCCCCCCCCCEEEECCCCHHCCCCCCCCCCHHCCCCHHHHCCHHHHHHHHCCCCCCCCC
NLQSLDQVKTETKTIPKLFEVLKKINQKAAPPVADNLGILDSGKILSKSPPTISSEVTDD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
LITTAPLPVAPSIPTPTTELPQEKETSLPSTALPSPDISSSSTVKFSDVPNSFWASSFIQ
HHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH
SLVEQDFIAQINNDQFEPDKPVTRAEFAAQIAKVFEEKSAKKSVVYKDIKGDSTAQSEIQ
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TSTKSGFLSGYPGDVFRPEEKVSRLQVLVSLASGLSLEIPSDPDSVLSVYKDTTEIPDWA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCHHH
KEKVAAATAAELVVSHPDVKMLNPNQPATRAEVAAVFYQALVKLGQVEKISSEYIVNPKK
HHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCC
EN
CC
>Mature Secondary Structure 
TDTPTKLPSQLRPVKPDEWIAIFVALGTFGSIFFWATTGEKNGFNLLSKPMLSTPLSES
CCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCHHHH
FGSSNIASGKSIFSLDIPQLKTSTGKSGSNFEESSQNPEELGTSLDTLTSMTDPVEDDEP
CCCCCCCCCCCEEEECCCCHHCCCCCCCCCCHHCCCCHHHHCCHHHHHHHHCCCCCCCCC
NLQSLDQVKTETKTIPKLFEVLKKINQKAAPPVADNLGILDSGKILSKSPPTISSEVTDD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
LITTAPLPVAPSIPTPTTELPQEKETSLPSTALPSPDISSSSTVKFSDVPNSFWASSFIQ
HHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH
SLVEQDFIAQINNDQFEPDKPVTRAEFAAQIAKVFEEKSAKKSVVYKDIKGDSTAQSEIQ
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TSTKSGFLSGYPGDVFRPEEKVSRLQVLVSLASGLSLEIPSDPDSVLSVYKDTTEIPDWA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCHHH
KEKVAAATAAELVVSHPDVKMLNPNQPATRAEVAAVFYQALVKLGQVEKISSEYIVNPKK
HHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCC
EN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8195085 [H]