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The map label for this gene is ykfC [C]

Identifier: 113474819

GI number: 113474819

Start: 1615715

End: 1616581

Strand: Direct

Name: ykfC [C]

Synonym: Tery_1035

Alternate gene names: 113474819

Gene position: 1615715-1616581 (Clockwise)

Preceding gene: 113474818

Following gene: 113474821

Centisome position: 20.85

GC content: 34.26

Gene sequence:

>867_bases
TTGAAAATTATCGAAAGAAAACCCAGAATAATTTCCGCAGCTCCCTACCGAGACCGAATCATCCATCACGCCTTATGTAA
TATTATTATTCCCATCTTTGAAAAAACATTTATCTACGATACTTATGCCAATAGAATCAATTTTGGTACTCATAAAGCCC
TAAGTCGCTTCACCAAATTTTCCTGTTCCAGCTGTTACGTTTTACAATGCGACATAGTTAAATATTTTCCCAGCATCGAC
CATCAAATTCTCAAAGAAATTATTCGTCGCCAAATCAAATGTCAAGATACTCTCTGGTTAATTGAAAAAATTATTGATGG
AAGTAACCAACAAATTCCGGTATTAACTAAATTTCCCGGAGACGACTTACTCTCTTCAATAAATAGGAGAAAAGGTTTAC
CCCTAGGAAATTTAACTAGCCAATTTTTCGCCAACTTATACCTCAATAATTTCGATCATTTCATCAAAGAAGAACTGAAA
GTCAAAAAATATCTACGTTATGTCGATGACTTTGCTTTATTCTCAGACGACAAAAAATTTCTAGTTATTGCCAGACAAAA
AATTGAAACATATCTAGCCAACCTCTGCCTCAAGATTCATCCTATTAAAAGCCAATTATTTCAAACAAAAAAAGGAGCTA
ACTTTGTTGGTTTCCTAGTATTGCCAAACCGCATTAGAATACGTTCAGAAAATTTAAGAGCTGCCAGAAAAAAAATTCGA
CAATTACACGCACATTATCGACAAGGAAACATAGAATCTAGCCACATCCAAAAATCTCTACAAAGTTGGTTTGCTCATTT
AGACCATGGCAATACCTGGCGCTTGAAACAAAAAATACTAACTTTTCTCAATACTATGGGAGAATAA

Upstream 100 bases:

>100_bases
CAGAATTTTCTGAAATTTAACTACAACTTAGAATTCATAATTACTACAACTAAAAACAGAATTATAAACTAAAACCTATC
AACCAGGAAAATATAACACC

Downstream 100 bases:

>100_bases
TTACGGGACTGACAAACCAAAGCTCCGTGGCGGTAGCTGGAACCACAATTCTAGACATTGCCGGAGTGCCAGGGGCAACT
ATAAAAATGCCGACAACCTC

Product: hypothetical protein

Products: NA

Alternate protein names: Retron-Type Reverse Transcriptase; Reverse Transcriptase Family Protein; Reverse Transcriptase; Reverse Transcriptase/Maturase; Reverse Transcriptase/Maturase Family Protein; CRISPR-Associated Protein; GBSi1 Group II Intron Maturase; Phage-Encoded Reverse Transcriptase; Regulatory Protein GntR; Maturase; Reverse Transcriptase-Like Protein; Group II Intron Reverse Transcriptase/Maturase

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MKIIERKPRIISAAPYRDRIIHHALCNIIIPIFEKTFIYDTYANRINFGTHKALSRFTKFSCSSCYVLQCDIVKYFPSID
HQILKEIIRRQIKCQDTLWLIEKIIDGSNQQIPVLTKFPGDDLLSSINRRKGLPLGNLTSQFFANLYLNNFDHFIKEELK
VKKYLRYVDDFALFSDDKKFLVIARQKIETYLANLCLKIHPIKSQLFQTKKGANFVGFLVLPNRIRIRSENLRAARKKIR
QLHAHYRQGNIESSHIQKSLQSWFAHLDHGNTWRLKQKILTFLNTMGE

Sequences:

>Translated_288_residues
MKIIERKPRIISAAPYRDRIIHHALCNIIIPIFEKTFIYDTYANRINFGTHKALSRFTKFSCSSCYVLQCDIVKYFPSID
HQILKEIIRRQIKCQDTLWLIEKIIDGSNQQIPVLTKFPGDDLLSSINRRKGLPLGNLTSQFFANLYLNNFDHFIKEELK
VKKYLRYVDDFALFSDDKKFLVIARQKIETYLANLCLKIHPIKSQLFQTKKGANFVGFLVLPNRIRIRSENLRAARKKIR
QLHAHYRQGNIESSHIQKSLQSWFAHLDHGNTWRLKQKILTFLNTMGE
>Mature_288_residues
MKIIERKPRIISAAPYRDRIIHHALCNIIIPIFEKTFIYDTYANRINFGTHKALSRFTKFSCSSCYVLQCDIVKYFPSID
HQILKEIIRRQIKCQDTLWLIEKIIDGSNQQIPVLTKFPGDDLLSSINRRKGLPLGNLTSQFFANLYLNNFDHFIKEELK
VKKYLRYVDDFALFSDDKKFLVIARQKIETYLANLCLKIHPIKSQLFQTKKGANFVGFLVLPNRIRIRSENLRAARKKIR
QLHAHYRQGNIESSHIQKSLQSWFAHLDHGNTWRLKQKILTFLNTMGE

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33911; Mature: 33911

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIERKPRIISAAPYRDRIIHHALCNIIIPIFEKTFIYDTYANRINFGTHKALSRFTKF
CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
SCSSCYVLQCDIVKYFPSIDHQILKEIIRRQIKCQDTLWLIEKIIDGSNQQIPVLTKFPG
CCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
DDLLSSINRRKGLPLGNLTSQFFANLYLNNFDHFIKEELKVKKYLRYVDDFALFSDDKKF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LVIARQKIETYLANLCLKIHPIKSQLFQTKKGANFVGFLVLPNRIRIRSENLRAARKKIR
EEHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCEEEEEEECCEEEEEHHHHHHHHHHHH
QLHAHYRQGNIESSHIQKSLQSWFAHLDHGNTWRLKQKILTFLNTMGE
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIIERKPRIISAAPYRDRIIHHALCNIIIPIFEKTFIYDTYANRINFGTHKALSRFTKF
CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
SCSSCYVLQCDIVKYFPSIDHQILKEIIRRQIKCQDTLWLIEKIIDGSNQQIPVLTKFPG
CCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
DDLLSSINRRKGLPLGNLTSQFFANLYLNNFDHFIKEELKVKKYLRYVDDFALFSDDKKF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LVIARQKIETYLANLCLKIHPIKSQLFQTKKGANFVGFLVLPNRIRIRSENLRAARKKIR
EEHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCEEEEEEECCEEEEEHHHHHHHHHHHH
QLHAHYRQGNIESSHIQKSLQSWFAHLDHGNTWRLKQKILTFLNTMGE
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA