| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474801
Identifier: 113474801
GI number: 113474801
Start: 1579082
End: 1580158
Strand: Direct
Name: 113474801
Synonym: Tery_1012
Alternate gene names: NA
Gene position: 1579082-1580158 (Clockwise)
Preceding gene: 113474798
Following gene: 113474802
Centisome position: 20.37
GC content: 41.97
Gene sequence:
>1077_bases ATGCGTAAACTTTTATTAACAGCAATATTAAGTATATTCTCTCTATGGACAAGTGGATGCGAATCTCTTCCCTTTTTTAA CAATAGAGAGACTTCTACCGTGAATACTCCTGAGGCTTCTCAAACTCCAAAGTTAGAACCTTCAGAATCTCCATCTCCAA CACCTACTAATAAAGTATTTCCATCTCCAGATATTCCCCAAAAGTCAAAAACGGCAACAAATTTAACAAGATCTACAGAC CCGAATGAAAGAAGTAAATCCTTAAAACAAGAAACTCAAATTTCAGATCCCTTCTCTGATTTACCAACTATCCCAGTGCC ATCTCAAGACTCAGTACCTGGTGTTCCACGACTTCCTAAAGTAGATAGTCAACAAGTACCAGATCTTCCCACACTACCAA ATATTGAATTATTCTCCTCTGGGAGACAAACACAGAGAAATCAACCGATAACACAGGGTCAAGATCCAACTGAAGTTGCT CAAGCACCAAATTTACAACAGCCATCTCAAACCAGAAGAACTATACCAGGAAATCAAAACCTAGGTTCCCCAAAACCTTC CTCTCAACCAAATATAACCACACCAGCTAGTTCACAACAGTTACCAAGTTTACCTGAATTGCCCTTACAACCAACCCCAC CTGCTCAGTGGAGAGGTCCTGGTGTTCTACCTAAGCCCTTAAAGCTACCAAGCTCATCTACTAAACAATTACCAAGTTTA CCTGAATTACCCCAACCAAGTCCACCTGCTCAGTGGAGAGGTCCTGGTTTTCCACCTCCACCACCACCTCCACCACCACC ACCACCTCCTCCTCCACCTCCTCCAGATACTACTATTGCTGATGGCATAGAAGTTAGCGGGGTTGTGCAAGTAGGAAGTC AAAAACAGATTATTGTTAAAGTTCCTAGGGAAGCTACAAGTAGATATGTAACAGTTGGACAAAGGTTGGCTAATGGACAG GTATTGGTCAAGAGAGTTGACTTGAAGATGGGTGCTGACCCAATTGTTGTTTTTGAGCAAAGTGGTGTAGAAGTTTTCAA AGAGGTAGGAAGTAAGCCGACAACTACTGAAGGTTAA
Upstream 100 bases:
>100_bases CAAACTCTGTATTAGATGAACGTAGTTGTTAACTTAAACATTGTACAATTGAGCAAAATTATTGCTATCTTATTTAAGAT TAGGCTTTTTATAATTGCCA
Downstream 100 bases:
>100_bases ATGAAATGATTTATAAAAAATGCTAGAATTTATAAGAGTGTACCAAAATCCTTTGTGTTGCCCTGATGCATATTTCCTAT CCTCTAAAAAGCACAGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 358
Protein sequence:
>358_residues MRKLLLTAILSIFSLWTSGCESLPFFNNRETSTVNTPEASQTPKLEPSESPSPTPTNKVFPSPDIPQKSKTATNLTRSTD PNERSKSLKQETQISDPFSDLPTIPVPSQDSVPGVPRLPKVDSQQVPDLPTLPNIELFSSGRQTQRNQPITQGQDPTEVA QAPNLQQPSQTRRTIPGNQNLGSPKPSSQPNITTPASSQQLPSLPELPLQPTPPAQWRGPGVLPKPLKLPSSSTKQLPSL PELPQPSPPAQWRGPGFPPPPPPPPPPPPPPPPPPDTTIADGIEVSGVVQVGSQKQIIVKVPREATSRYVTVGQRLANGQ VLVKRVDLKMGADPIVVFEQSGVEVFKEVGSKPTTTEG
Sequences:
>Translated_358_residues MRKLLLTAILSIFSLWTSGCESLPFFNNRETSTVNTPEASQTPKLEPSESPSPTPTNKVFPSPDIPQKSKTATNLTRSTD PNERSKSLKQETQISDPFSDLPTIPVPSQDSVPGVPRLPKVDSQQVPDLPTLPNIELFSSGRQTQRNQPITQGQDPTEVA QAPNLQQPSQTRRTIPGNQNLGSPKPSSQPNITTPASSQQLPSLPELPLQPTPPAQWRGPGVLPKPLKLPSSSTKQLPSL PELPQPSPPAQWRGPGFPPPPPPPPPPPPPPPPPPDTTIADGIEVSGVVQVGSQKQIIVKVPREATSRYVTVGQRLANGQ VLVKRVDLKMGADPIVVFEQSGVEVFKEVGSKPTTTEG >Mature_358_residues MRKLLLTAILSIFSLWTSGCESLPFFNNRETSTVNTPEASQTPKLEPSESPSPTPTNKVFPSPDIPQKSKTATNLTRSTD PNERSKSLKQETQISDPFSDLPTIPVPSQDSVPGVPRLPKVDSQQVPDLPTLPNIELFSSGRQTQRNQPITQGQDPTEVA QAPNLQQPSQTRRTIPGNQNLGSPKPSSQPNITTPASSQQLPSLPELPLQPTPPAQWRGPGVLPKPLKLPSSSTKQLPSL PELPQPSPPAQWRGPGFPPPPPPPPPPPPPPPPPPDTTIADGIEVSGVVQVGSQKQIIVKVPREATSRYVTVGQRLANGQ VLVKRVDLKMGADPIVVFEQSGVEVFKEVGSKPTTTEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38440; Mature: 38440
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKLLLTAILSIFSLWTSGCESLPFFNNRETSTVNTPEASQTPKLEPSESPSPTPTNKVF CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PSPDIPQKSKTATNLTRSTDPNERSKSLKQETQISDPFSDLPTIPVPSQDSVPGVPRLPK CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCC VDSQQVPDLPTLPNIELFSSGRQTQRNQPITQGQDPTEVAQAPNLQQPSQTRRTIPGNQN CCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCC LGSPKPSSQPNITTPASSQQLPSLPELPLQPTPPAQWRGPGVLPKPLKLPSSSTKQLPSL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC PELPQPSPPAQWRGPGFPPPPPPPPPPPPPPPPPPDTTIADGIEVSGVVQVGSQKQIIVK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCCCEEEEE VPREATSRYVTVGQRLANGQVLVKRVDLKMGADPIVVFEQSGVEVFKEVGSKPTTTEG CCHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCEEEECCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure MRKLLLTAILSIFSLWTSGCESLPFFNNRETSTVNTPEASQTPKLEPSESPSPTPTNKVF CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PSPDIPQKSKTATNLTRSTDPNERSKSLKQETQISDPFSDLPTIPVPSQDSVPGVPRLPK CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCC VDSQQVPDLPTLPNIELFSSGRQTQRNQPITQGQDPTEVAQAPNLQQPSQTRRTIPGNQN CCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCC LGSPKPSSQPNITTPASSQQLPSLPELPLQPTPPAQWRGPGVLPKPLKLPSSSTKQLPSL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC PELPQPSPPAQWRGPGFPPPPPPPPPPPPPPPPPPDTTIADGIEVSGVVQVGSQKQIIVK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCCCEEEEE VPREATSRYVTVGQRLANGQVLVKRVDLKMGADPIVVFEQSGVEVFKEVGSKPTTTEG CCHHHHHHHHHHHHHHCCCEEEEEEECHHCCCCCEEEECCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA