Click here to switch to the map view.

The map label for this gene is cpeB [H]

Identifier: 113474788

GI number: 113474788

Start: 1562383

End: 1562916

Strand: Reverse

Name: cpeB [H]

Synonym: Tery_0998

Alternate gene names: 113474788

Gene position: 1562916-1562383 (Counterclockwise)

Preceding gene: 113474790

Following gene: 113474787

Centisome position: 20.17

GC content: 42.7

Gene sequence:

>534_bases
ATGTTAGATGCTTTTTCAAAAGCTGTAGTTACAGCAGATACAAAAACTGCTCCTATTGGTACCGAAGAATTAGCTAGCCT
GAAAGAATTCATTGCCGCAGGTAACAAGCGTCTTGATTCAGTAAACGCTATTACTAGCAACGCCAGCTGTATTGTATCTG
ATGCTGTTGCTGGTATGATCTGTGAAAACAATGGATTAATCCAGGCAGGTGGTAACTGCTATCCTAACCGTCGTATGGCT
GCTTGCTTGCGTGATGGAGAAATTATTCTCCGCTATGTTACCTATGCACTACTAGCTGGGGATGCTTCTGTCCTCAATGA
CCGTTGCTTAAATGGTTTGAAAGAAACCTACATCGCATTAGGTGTACCAGCTACAAGTGCAGCTCGTGCAGTGGGAATTA
TGAAAGCAGCAGCTGTTGCTTTTATCAACAATACAGCTTCTCAACGCAAGATGAGTGTTACTGAAGGTGACTGCTCTAGT
TTAGCCAGTGAATGTGCAGGCTACTTTGATACAGTCATTGCTGCTATTAGTTAA

Upstream 100 bases:

>100_bases
GAATTGTTACTTTCTTCCTCAGAAAGAGAGACAAAAGAGACATTCTTATTAGAAACTTTATATCCAGAGTTATAGAAAAT
AAACTTTTAAGGAGAACTCA

Downstream 100 bases:

>100_bases
AATCACTTAGTTTTGAGTTATTCAAACTAAAGACTTAACCTTTTAAAGCAATCCATTTTTAAAGTTAGAGAAAAACCTAA
TTATGTCATCAGTTCATGAG

Product: phycobilisome protein

Products: NA

Alternate protein names: C-phycoerythrin class I beta chain [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MLDAFSKAVVTADTKTAPIGTEELASLKEFIAAGNKRLDSVNAITSNASCIVSDAVAGMICENNGLIQAGGNCYPNRRMA
ACLRDGEIILRYVTYALLAGDASVLNDRCLNGLKETYIALGVPATSAARAVGIMKAAAVAFINNTASQRKMSVTEGDCSS
LASECAGYFDTVIAAIS

Sequences:

>Translated_177_residues
MLDAFSKAVVTADTKTAPIGTEELASLKEFIAAGNKRLDSVNAITSNASCIVSDAVAGMICENNGLIQAGGNCYPNRRMA
ACLRDGEIILRYVTYALLAGDASVLNDRCLNGLKETYIALGVPATSAARAVGIMKAAAVAFINNTASQRKMSVTEGDCSS
LASECAGYFDTVIAAIS
>Mature_177_residues
MLDAFSKAVVTADTKTAPIGTEELASLKEFIAAGNKRLDSVNAITSNASCIVSDAVAGMICENNGLIQAGGNCYPNRRMA
ACLRDGEIILRYVTYALLAGDASVLNDRCLNGLKETYIALGVPATSAARAVGIMKAAAVAFINNTASQRKMSVTEGDCSS
LASECAGYFDTVIAAIS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the periphery of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18340; Mature: 18340

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDAFSKAVVTADTKTAPIGTEELASLKEFIAAGNKRLDSVNAITSNASCIVSDAVAGMI
CCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHEEHHHHHHEE
CENNGLIQAGGNCYPNRRMAACLRDGEIILRYVTYALLAGDASVLNDRCLNGLKETYIAL
ECCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
GVPATSAARAVGIMKAAAVAFINNTASQRKMSVTEGDCSSLASECAGYFDTVIAAIS
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDAFSKAVVTADTKTAPIGTEELASLKEFIAAGNKRLDSVNAITSNASCIVSDAVAGMI
CCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHEEHHHHHHEE
CENNGLIQAGGNCYPNRRMAACLRDGEIILRYVTYALLAGDASVLNDRCLNGLKETYIAL
ECCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
GVPATSAARAVGIMKAAAVAFINNTASQRKMSVTEGDCSSLASECAGYFDTVIAAIS
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7512390 [H]