| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474769
Identifier: 113474769
GI number: 113474769
Start: 1538888
End: 1539967
Strand: Direct
Name: 113474769
Synonym: Tery_0976
Alternate gene names: NA
Gene position: 1538888-1539967 (Clockwise)
Preceding gene: 113474768
Following gene: 113474770
Centisome position: 19.86
GC content: 38.52
Gene sequence:
>1080_bases ATGTTGAATTGGAAAGCAAAAATTCAGGCAGGATTAATTTTAATATTTGTGGGATGGGCAACTCCTGTGTTAAGTAGTCC TCTTCATATCCTAATTGATGTTCGGGGGAATGTTGAAGTCAAAAAGGCTGAATGGAAGACATTTAATAAGGCTGAGTCTG GTATGACTCTCAGTAGTGAGGACAAAGTTAAATTAGGTAGTAATGCTTCTTTAATCATTTATTGTAGTGATAAGAATAAA AGGGTAGTGGAGGGACCAGGAACCTATCTTGTTTCTGAGAAATGTCTTCCAGGAAAGCCTACTATTAAAGTATGTCCAAG TTGCAATAATGATGATGCACGTCCTGTTGGAGTTAAAGAGGAAGGGTTAAAACAACTACCTTATCTCATTAGTCCCCGTA AGACTTATGTTTTCAATAACCCCTTAACTATTCGTTGGAATGAAGTTTTTGGAGCAACTCTATACAAGGTTAAGTTTGAG TTGGGAGGATGGGAAAGGGAAACAAAGAAAACCCAAATTGTTTATGATGGGGAGTTGGAACCGGGAGATTGGAATAGTAT AATTATAGAGGCGGATAATGGAGCTACTTCTTCAGAAGTGGATGCTCAGAATAGTTGGTTTCAGGTGTTGAAGGATGAGG AAGCAAAGATTTTACGAGAACAAGTAGCGGCTATTAAGCGGCAGGAATTAAGTCGGGAGCAAGAAGGCTTGGTTTTAGCT TATTTTTATCGAGGGAATGAGTTAAATTTTGAGGCTATTCAGGTATTGGAAGGCTTGGTAAAGTCTAAGAGTCAGAGAGC AACGGTTTATCAGTTGTTGGGGGACATTTACCTACAGGTAGGATTGATTTTAATGGCCAAGGATGTTTATCAGCAAGGGT TGGCGTTGACTATGGAGGAGGAGAATAAAGAAGTTAAGGCAATGATACAATGGGGTTTAGGGGAGATAGAATATCTATTA GGTAATAAGAATGGGGCTGTAAAGTGGTTGGAAAAGGCTAAGGTAAATTATTTTGCTTTAGGTAAGCAGCTAAATGAGAA AGAGAAAGAGCTAATAAAGAAAGTTTTCGGTGGAAGTTAA
Upstream 100 bases:
>100_bases CAGGAGCACATTGATAATTGTTTTCTGGTTGTTAATATTTAAACCTAAAACCTAACACCTAACACCTCAAACCTAACACC TCAAACCTTATAAAAATTTT
Downstream 100 bases:
>100_bases TTATGAAAAAAGGTTTGATGAATTTATCTATTTTGTCTGTTGTTACTCTTGTGGGGAGGATGGGTTTTTGAGAATAGAAT TTTGTGAAATTTGAAATATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MLNWKAKIQAGLILIFVGWATPVLSSPLHILIDVRGNVEVKKAEWKTFNKAESGMTLSSEDKVKLGSNASLIIYCSDKNK RVVEGPGTYLVSEKCLPGKPTIKVCPSCNNDDARPVGVKEEGLKQLPYLISPRKTYVFNNPLTIRWNEVFGATLYKVKFE LGGWERETKKTQIVYDGELEPGDWNSIIIEADNGATSSEVDAQNSWFQVLKDEEAKILREQVAAIKRQELSREQEGLVLA YFYRGNELNFEAIQVLEGLVKSKSQRATVYQLLGDIYLQVGLILMAKDVYQQGLALTMEEENKEVKAMIQWGLGEIEYLL GNKNGAVKWLEKAKVNYFALGKQLNEKEKELIKKVFGGS
Sequences:
>Translated_359_residues MLNWKAKIQAGLILIFVGWATPVLSSPLHILIDVRGNVEVKKAEWKTFNKAESGMTLSSEDKVKLGSNASLIIYCSDKNK RVVEGPGTYLVSEKCLPGKPTIKVCPSCNNDDARPVGVKEEGLKQLPYLISPRKTYVFNNPLTIRWNEVFGATLYKVKFE LGGWERETKKTQIVYDGELEPGDWNSIIIEADNGATSSEVDAQNSWFQVLKDEEAKILREQVAAIKRQELSREQEGLVLA YFYRGNELNFEAIQVLEGLVKSKSQRATVYQLLGDIYLQVGLILMAKDVYQQGLALTMEEENKEVKAMIQWGLGEIEYLL GNKNGAVKWLEKAKVNYFALGKQLNEKEKELIKKVFGGS >Mature_359_residues MLNWKAKIQAGLILIFVGWATPVLSSPLHILIDVRGNVEVKKAEWKTFNKAESGMTLSSEDKVKLGSNASLIIYCSDKNK RVVEGPGTYLVSEKCLPGKPTIKVCPSCNNDDARPVGVKEEGLKQLPYLISPRKTYVFNNPLTIRWNEVFGATLYKVKFE LGGWERETKKTQIVYDGELEPGDWNSIIIEADNGATSSEVDAQNSWFQVLKDEEAKILREQVAAIKRQELSREQEGLVLA YFYRGNELNFEAIQVLEGLVKSKSQRATVYQLLGDIYLQVGLILMAKDVYQQGLALTMEEENKEVKAMIQWGLGEIEYLL GNKNGAVKWLEKAKVNYFALGKQLNEKEKELIKKVFGGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40403; Mature: 40403
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNWKAKIQAGLILIFVGWATPVLSSPLHILIDVRGNVEVKKAEWKTFNKAESGMTLSSE CCCCCCCCCCCEEEEEECHHHHHHCCCEEEEEEECCCEEEEECCCCCCCHHHCCCEECCC DKVKLGSNASLIIYCSDKNKRVVEGPGTYLVSEKCLPGKPTIKVCPSCNNDDARPVGVKE CCEEECCCCEEEEEECCCCCEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCH EGLKQLPYLISPRKTYVFNNPLTIRWNEVFGATLYKVKFELGGWERETKKTQIVYDGELE HHHHHCCEEECCCEEEEECCCEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCC PGDWNSIIIEADNGATSSEVDAQNSWFQVLKDEEAKILREQVAAIKRQELSREQEGLVLA CCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHCCEEEE YFYRGNELNFEAIQVLEGLVKSKSQRATVYQLLGDIYLQVGLILMAKDVYQQGLALTMEE EEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC ENKEVKAMIQWGLGEIEYLLGNKNGAVKWLEKAKVNYFALGKQLNEKEKELIKKVFGGS CCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MLNWKAKIQAGLILIFVGWATPVLSSPLHILIDVRGNVEVKKAEWKTFNKAESGMTLSSE CCCCCCCCCCCEEEEEECHHHHHHCCCEEEEEEECCCEEEEECCCCCCCHHHCCCEECCC DKVKLGSNASLIIYCSDKNKRVVEGPGTYLVSEKCLPGKPTIKVCPSCNNDDARPVGVKE CCEEECCCCEEEEEECCCCCEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCH EGLKQLPYLISPRKTYVFNNPLTIRWNEVFGATLYKVKFELGGWERETKKTQIVYDGELE HHHHHCCEEECCCEEEEECCCEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCC PGDWNSIIIEADNGATSSEVDAQNSWFQVLKDEEAKILREQVAAIKRQELSREQEGLVLA CCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHCCEEEE YFYRGNELNFEAIQVLEGLVKSKSQRATVYQLLGDIYLQVGLILMAKDVYQQGLALTMEE EEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC ENKEVKAMIQWGLGEIEYLLGNKNGAVKWLEKAKVNYFALGKQLNEKEKELIKKVFGGS CCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA