Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474676

Identifier: 113474676

GI number: 113474676

Start: 1355187

End: 1355828

Strand: Direct

Name: 113474676

Synonym: Tery_0856

Alternate gene names: NA

Gene position: 1355187-1355828 (Clockwise)

Preceding gene: 113474675

Following gene: 113474677

Centisome position: 17.49

GC content: 29.44

Gene sequence:

>642_bases
ATGAAGCTTTATCAGTTAACAACAACAGCAATAATTACTTTAGTTTCTATTATTAGTAATCCTCTAGAAAGTTTTAGTCA
AAAGAAGTTTTTTATTCCTCCAGCTTTAGGGCAAGATTCGTGGGTTAATTCTCCTACCCGAATAGAAATCACAAAAAAAA
CATCATTACAAGAAATTAACTATAAATTAATAGAAATAGATACTATGAGAAAATATAACGCGCCTGTATCCGAAGCAGAT
AAAAAAGCTATTATAGAAGACTTAGAAAAAATTGAAGCCCTGAGAAAAAGTCGTAATTTAATTATTAATTATATATGTTC
AGGCTATAATATTGCTGAAGCTTGGGAAAAGGCAGTTAAAGCTTGTGAAAGAAGCTTAAGAAAGGGAGATGATCCAGATA
TATTTCACCCAATACATGAAGCTTACTTTGGTGCCAAAAAATACAACAAAGCAATTAATTCTCTGAAACAGTCTCTAAAT
AGTGATAATAATAATTATCCTTTTGTCTCATATCAAAAACTAGGATTAATGTATTTTAAATTAGGCGATTATCCTGAAGC
AATTAGGCAATATCAAAAAGCAGTAGAATCAATAAAAAAATCCTATGAAGGATATAATTGTGAAGCTTGCATTCATGATT
AA

Upstream 100 bases:

>100_bases
GCTCAATTTTGTAGAAGTCTATTTCAGAAACCCTAATAACTTATATTGTGTTCAGCTATATTCTGATCAATTATCTTTTC
AATTTAAAGGAGTGTTAATT

Downstream 100 bases:

>100_bases
TTTGCTTCTAATCTTTCTTTAATTCAGTCACATTTTGGATTTTCATTACTCCAAAATGGTAAAATAGATGAAGCTGAGAA
AAAGTTTTTAGAGGCTATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEINYKLIEIDTMRKYNAPVSEAD
KKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVKACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLN
SDNNNYPFVSYQKLGLMYFKLGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD

Sequences:

>Translated_213_residues
MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEINYKLIEIDTMRKYNAPVSEAD
KKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVKACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLN
SDNNNYPFVSYQKLGLMYFKLGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD
>Mature_213_residues
MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEINYKLIEIDTMRKYNAPVSEAD
KKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVKACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLN
SDNNNYPFVSYQKLGLMYFKLGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24511; Mature: 24511

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEIN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHC
YKLIEIDTMRKYNAPVSEADKKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVK
EEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLNSDNNNYPFVSYQKLGLMYFK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCEEE
LGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MKLYQLTTTAIITLVSIISNPLESFSQKKFFIPPALGQDSWVNSPTRIEITKKTSLQEIN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHC
YKLIEIDTMRKYNAPVSEADKKAIIEDLEKIEALRKSRNLIINYICSGYNIAEAWEKAVK
EEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ACERSLRKGDDPDIFHPIHEAYFGAKKYNKAINSLKQSLNSDNNNYPFVSYQKLGLMYFK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCEEE
LGDYPEAIRQYQKAVESIKKSYEGYNCEACIHD
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA