| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is terE [H]
Identifier: 113474553
GI number: 113474553
Start: 1143474
End: 1144046
Strand: Direct
Name: terE [H]
Synonym: Tery_0707
Alternate gene names: 113474553
Gene position: 1143474-1144046 (Clockwise)
Preceding gene: 113474552
Following gene: 113474556
Centisome position: 14.75
GC content: 32.64
Gene sequence:
>573_bases ATGTCTATTAATCTCAGCAAAGGTGAAAGACTAAATCTTTCCAAAGAATCTCCTAATTTAACACAAGCTGGTATTGGGTT AGGATGGGATATTAATACTACAGATACAGGTTCTGAATTTGATTTAGATGCTTCTGTATTTATGTTAGGAGCTAATGCAA AAATTCCTTCAGAAAAATACTTTGTTTTCTACAATAATTTAACATCACCAGATGGTTCTGTTAAACATTCAGGAGATAGT AGAACAGGAGAAGGTTCTGGAGATGATGAACTAATAGAAATAGATTTAAAAAAAGTAGATCAAGAAATTCAAGAAATAGT GTTTGTCGTAACTATTCATGAAGCGGATGCTCGAAGACAAAACTTTGGACAAGTCAGAAATTCTTTTATTAGAATTTGTA ATATTACTACTGGAGAAGAAGTAACTAAATATGAATTAGAGGAAGATTTTTCCCGAGAAACTGCCCTAGAATTTGGGAGA CTTTATCGCAAAGATAATGACTGGAGATTCCAAGCTGTTGGACAAGGTTATAATTCTGGCTTACAAGGGTTTATTGATAA GTATGTTTCTTAG
Upstream 100 bases:
>100_bases ATATTACAATTAAAATAGGATTGCTATCTTAATAATTGTTAACTAATAACTTATAAACTGGGATAGGATTGCTATATTAA TAACCGATAAGAGGTAAATT
Downstream 100 bases:
>100_bases CTTAAGATTGTAGAGAAATAATGGTAATATTAACCCATAATTTTTTCTTAGGTATTGACTAGATAATTCTAGTTCTTATA AAGCATAATTCCCATTGATA
Product: stress protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MSINLSKGERLNLSKESPNLTQAGIGLGWDINTTDTGSEFDLDASVFMLGANAKIPSEKYFVFYNNLTSPDGSVKHSGDS RTGEGSGDDELIEIDLKKVDQEIQEIVFVVTIHEADARRQNFGQVRNSFIRICNITTGEEVTKYELEEDFSRETALEFGR LYRKDNDWRFQAVGQGYNSGLQGFIDKYVS
Sequences:
>Translated_190_residues MSINLSKGERLNLSKESPNLTQAGIGLGWDINTTDTGSEFDLDASVFMLGANAKIPSEKYFVFYNNLTSPDGSVKHSGDS RTGEGSGDDELIEIDLKKVDQEIQEIVFVVTIHEADARRQNFGQVRNSFIRICNITTGEEVTKYELEEDFSRETALEFGR LYRKDNDWRFQAVGQGYNSGLQGFIDKYVS >Mature_189_residues SINLSKGERLNLSKESPNLTQAGIGLGWDINTTDTGSEFDLDASVFMLGANAKIPSEKYFVFYNNLTSPDGSVKHSGDSR TGEGSGDDELIEIDLKKVDQEIQEIVFVVTIHEADARRQNFGQVRNSFIRICNITTGEEVTKYELEEDFSRETALEFGRL YRKDNDWRFQAVGQGYNSGLQGFIDKYVS
Specific function: Not known; seems to contribute to the tellurium resistance (Ter) mechanism [H]
COG id: COG2310
COG function: function code T; Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CAPAB/TerDEXZ family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003325 [H]
Pfam domain/function: PF02342 TerD [H]
EC number: NA
Molecular weight: Translated: 21326; Mature: 21195
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSINLSKGERLNLSKESPNLTQAGIGLGWDINTTDTGSEFDLDASVFMLGANAKIPSEKY CCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEE FVFYNNLTSPDGSVKHSGDSRTGEGSGDDELIEIDLKKVDQEIQEIVFVVTIHEADARRQ EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHEEEEEEEECCHHHHH NFGQVRNSFIRICNITTGEEVTKYELEEDFSRETALEFGRLYRKDNDWRFQAVGQGYNSG HHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH LQGFIDKYVS HHHHHHHHCC >Mature Secondary Structure SINLSKGERLNLSKESPNLTQAGIGLGWDINTTDTGSEFDLDASVFMLGANAKIPSEKY CCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEE FVFYNNLTSPDGSVKHSGDSRTGEGSGDDELIEIDLKKVDQEIQEIVFVVTIHEADARRQ EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHEEEEEEEECCHHHHH NFGQVRNSFIRICNITTGEEVTKYELEEDFSRETALEFGRLYRKDNDWRFQAVGQGYNSG HHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH LQGFIDKYVS HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3049247 [H]