Click here to switch to the map view.

The map label for this gene is ccsA

Identifier: 113474487

GI number: 113474487

Start: 1034058

End: 1035113

Strand: Direct

Name: ccsA

Synonym: Tery_0633

Alternate gene names: 113474487

Gene position: 1034058-1035113 (Clockwise)

Preceding gene: 113474484

Following gene: 113474488

Centisome position: 13.34

GC content: 38.26

Gene sequence:

>1056_bases
ATGGATCTAGTCAAACTCCAAAAGTCATTGGACAACATCTCGTTTGGTATCTTGTTTGCCACAATGCTTATTTATTGGTT
GGGTGCTGCTTTTCCTCGTATCCCCTATCTCTCAATTTTAGGTTCTACAGGAATGGCGATCGCTAATCTCTGTATTGCCA
CATTACTCGGAGCTCGCTGGTTAGAAGCTAGTTATTTCCCTATTAGCAATTTGTACGAATCTTTATTTTTCTTGACATGG
GGAATTACCACTATTCATCTTATAGCTGAAAATATGAGTGGCGCTCGCCTGGTTGGAGTATTTACCTCTCCAATTGCTAT
GGGTATTTCTGCTTTTGCTGCCCTAACTTTACCCTCCAATATGCAGATATCTGAGCCCTTGGTGCCTGCTCTAAAATCTA
ATTGGTTGATGATGCACGTTAGTGTCATGATGTTGAGTTATGCAACCCTTATAGTAGGGGCATTATTGGCTATCGCTTTT
CTTATAATAACCAGTGGCCAAAAAGTTGAACTTAGTGGTAGTTCTTTTGGCACTCGTTCTTCTAGAAATAATCATTTTGT
GAAGTATCAAAAAAATTGGCAACTACAAAAAGAAAGACCATTACTGAAGGAAATCAAAAACAACTATAAACCTTTTCCCC
AATCTACAAAAAATGACCATAGTCAAACTTCAGTCTTGGAAATAACCGAGGTTACTCAAAAAGTTGATCCAGAAATAATA
CTTTCACCAGAACGTTTAAATATTGCTCAAATCCTAGATAACATTAGCTATCGTATCATTGGTTTAGGATTCCCACTACT
AACTATTGGAATTATTGCTGGAGCAGTTTGGGCAAATGAAGCTTGGGGTTCTTATTGGAGTTGGGACCCAAAAGAAACTT
GGGCTTTAATTACTTGGTTAGTGTTTGCAGCTTATCTTCATGCCCGTATTACTAAAGGATGGCAAGGGCGAAAACCTGCT
ATTTTGGCCGCTACTGGATTTGCTGTAGTCTGGGTATGTTATTTAGGAGTAAATCTTTTAGGTAAAGGTTTACATTCTTA
TGGTTGGTTTTTGTGA

Upstream 100 bases:

>100_bases
CAAGAAAATCAACTAAAACGTTGCCTTAAAAGCTTAAAGCTTTGAGGCTTTAGATAAAATTTTTCGGTCAAATAAAATAC
ATAATTATGGAGAAAAATTA

Downstream 100 bases:

>100_bases
CATTCTCCCGACCCCGACTTCTGAAGGATAAAGCGCGGGCTTCCAATATCACTCTTAGACATTCCTATCCTACGCCACTG
ATCTAGGTAAAAATGCTCTC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MDLVKLQKSLDNISFGILFATMLIYWLGAAFPRIPYLSILGSTGMAIANLCIATLLGARWLEASYFPISNLYESLFFLTW
GITTIHLIAENMSGARLVGVFTSPIAMGISAFAALTLPSNMQISEPLVPALKSNWLMMHVSVMMLSYATLIVGALLAIAF
LIITSGQKVELSGSSFGTRSSRNNHFVKYQKNWQLQKERPLLKEIKNNYKPFPQSTKNDHSQTSVLEITEVTQKVDPEII
LSPERLNIAQILDNISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITKGWQGRKPA
ILAATGFAVVWVCYLGVNLLGKGLHSYGWFL

Sequences:

>Translated_351_residues
MDLVKLQKSLDNISFGILFATMLIYWLGAAFPRIPYLSILGSTGMAIANLCIATLLGARWLEASYFPISNLYESLFFLTW
GITTIHLIAENMSGARLVGVFTSPIAMGISAFAALTLPSNMQISEPLVPALKSNWLMMHVSVMMLSYATLIVGALLAIAF
LIITSGQKVELSGSSFGTRSSRNNHFVKYQKNWQLQKERPLLKEIKNNYKPFPQSTKNDHSQTSVLEITEVTQKVDPEII
LSPERLNIAQILDNISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITKGWQGRKPA
ILAATGFAVVWVCYLGVNLLGKGLHSYGWFL
>Mature_351_residues
MDLVKLQKSLDNISFGILFATMLIYWLGAAFPRIPYLSILGSTGMAIANLCIATLLGARWLEASYFPISNLYESLFFLTW
GITTIHLIAENMSGARLVGVFTSPIAMGISAFAALTLPSNMQISEPLVPALKSNWLMMHVSVMMLSYATLIVGALLAIAF
LIITSGQKVELSGSSFGTRSSRNNHFVKYQKNWQLQKERPLLKEIKNNYKPFPQSTKNDHSQTSVLEITEVTQKVDPEII
LSPERLNIAQILDNISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITKGWQGRKPA
ILAATGFAVVWVCYLGVNLLGKGLHSYGWFL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCSA_TRIEI (Q118J9)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720548.1
- STRING:   Q118J9
- GeneID:   4242771
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0633
- NMPDR:   fig|203124.1.peg.579
- eggNOG:   COG0755
- HOGENOM:   HBG733666
- OMA:   YNLPALV
- ProtClustDB:   CLSK892624
- BioCyc:   TERY203124:TERY_0633-MONOMER
- HAMAP:   MF_01391
- InterPro:   IPR002541
- InterPro:   IPR017562
- TIGRFAMs:   TIGR03144

Pfam domain/function: PF01578 Cytochrom_C_asm

EC number: NA

Molecular weight: Translated: 39038; Mature: 39038

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x157f16b8)-; HASH(0x15e5ca58)-; HASH(0x15e5a77c)-; HASH(0x1019d008)-; HASH(0x14c03d2c)-; HASH(0x1550dc98)-; HASH(0x15f288a0)-; HASH(0x1402f930)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVKLQKSLDNISFGILFATMLIYWLGAAFPRIPYLSILGSTGMAIANLCIATLLGARW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
LEASYFPISNLYESLFFLTWGITTIHLIAENMSGARLVGVFTSPIAMGISAFAALTLPSN
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCC
MQISEPLVPALKSNWLMMHVSVMMLSYATLIVGALLAIAFLIITSGQKVELSGSSFGTRS
CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
SRNNHFVKYQKNWQLQKERPLLKEIKNNYKPFPQSTKNDHSQTSVLEITEVTQKVDPEII
CCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
LSPERLNIAQILDNISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWL
ECCCCCCHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
VFAAYLHARITKGWQGRKPAILAATGFAVVWVCYLGVNLLGKGLHSYGWFL
HHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MDLVKLQKSLDNISFGILFATMLIYWLGAAFPRIPYLSILGSTGMAIANLCIATLLGARW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
LEASYFPISNLYESLFFLTWGITTIHLIAENMSGARLVGVFTSPIAMGISAFAALTLPSN
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCC
MQISEPLVPALKSNWLMMHVSVMMLSYATLIVGALLAIAFLIITSGQKVELSGSSFGTRS
CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
SRNNHFVKYQKNWQLQKERPLLKEIKNNYKPFPQSTKNDHSQTSVLEITEVTQKVDPEII
CCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
LSPERLNIAQILDNISYRIIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWL
ECCCCCCHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
VFAAYLHARITKGWQGRKPAILAATGFAVVWVCYLGVNLLGKGLHSYGWFL
HHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA