| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is recJ [H]
Identifier: 113474473
GI number: 113474473
Start: 1002049
End: 1004481
Strand: Direct
Name: recJ [H]
Synonym: Tery_0618
Alternate gene names: 113474473
Gene position: 1002049-1004481 (Clockwise)
Preceding gene: 113474472
Following gene: 113474474
Centisome position: 12.93
GC content: 34.07
Gene sequence:
>2433_bases ATGTCTCAAGAAAAAAAATATTGGCAAATCCTGAGTTCCAATCATCCACCTTATTCATTTATTGAATCTTTCAAAAGCTA TGTACCAGAATTATCGGGAAAATATCTAGCACAATTATTATGGCAACGTGGAATTAAAAATCCTGAAGATATAGCATCAT TTTTAGATCCGAAACAATATAAACCAGCTAGTTTTTCAGCATTTGGCTCAGAAATTAATAATGCCGTAGCAAGAATTATT TCTGCTAGAAATAATCAAGAAAAAGTTGCTATCTGGGGAGATTTTGATGCAGATGGGATTACGTCAACATCTGTACTATG GGATGGATTAGGAGAATTTTTAGATAAAATAGACCAACTAACTTATTATATTCCTAATAGGTTTACAGAATCTCATGGTT TGAATTTTTCTGGAATAGAAAGGTTAGCTAAAAAAAATTATAGTTTGATAATTACCTGCGATACAGGTAGTACAAATATT GCCGAAATAGAATATGCAAATAGTTTAGGTATAGATATAATTGTTACTGATCATCATACTATTCCCACAAAACGCCCACC GTTATTTGCTATTATTAATCCTCGCTATTTTTCTCAAGATCATCCCCTATATAATTTATCTGGAGTTGGAGTAGCTTATA AGCTTATAGAGGCACTTTATTTAACTCATCCGGAAATACCTCAACTTCCCCTAACAGAATTATTAGATTTAGTAGCTATT GGTTTAATTGCAGATCTAGTTGAACTAAGAGATGACTGTCGTTATTTAGCACAAATAGGTATTGAAAAATTAAGGACACA ATTACACAAAACTACCAGGCCAGGAGTTGCTAAACTTTTAGAATTGTGCCAAAAAACAGGCGATCGCCCTACAGATATTT CTTTTGGTATTGGCCCTCGAATTAATGCTGTAAGTAGAATTATGGGAGAGGCCAGTTTTTGTGTGGAACTATTGACAAGT CGTAACCCTCAACATTGTCAAAAACTAGCGTTACAAACAGAGTTGGCTAACTCTAGGCGCAAGTCTCTAGAAAAAGAAGT AGCTAAAGATATTGCCCAAAAATTGACAAAACTAGACCTTTCTACGACTCATGTCATAGTTCTGAGTGATCCTCAATGGC CTGTTGGTGTGCTAGGATTAGTGGCAGGCCAAATAGCTCAAAAGTATGGTCGTCCTACTATTTTATTTAGTGAGGAAACT GAAGTTACTAAAACTTCTGAAAAAAAATTATTAGCTCGCGGTTCTGCCCGTTCTGTTGGTAATATAAATCTTTATGAGTT GGTGAAAAATCAAGCACATTTGTTACATAATTTTGGCGGTCATCCTTTTGCTGCTGGTCTGAGTTTACCAGTAGAAAATA TTTCAATATTTACAGATGCTATTAATCAGTTATTGGGAGAAATATTAGGGGTCACTTTTAACCAAACCTCAGTAATAGAA GTAGATTTAATTATCACTGTATCTGAGTTAGGTAGAGATTTATTTCAAGAACTAAAGCTTTTGGAACCCTGTGGTATGGG AAACCCGGTGCCTAAACTTTTAATTCAAAATTGTTGGTTTACTGATATTTGGCATCAGAACCAAACAGACATGGAGGGAA ATAAAGTCAGATATATTAAAACAAATTTTGAAATTTGCGATAAGTCTATAGATAAAGGGTTTCCTGGTATTTGGTGGGGT CATTATAAGGAAGAAATTCCTGAAGAAATATGTGATGCTGTTCTAGAATTAGATTTCAATGCTAAAAAAAAATGTTATGA AGCTCGACTTATTGCTGTACAACCCAATTCCCAAGATAGTCAAGTCGTAGCATCGAACACCGTAAATTGGATATTAGACT GGCGCAATAATAGTCAACCTCTTTTTGAAAATAAAAACTCAAAGTTCCTAAATAAAAATTATAGTGACACGAATGAATCT AAGTTATCCCTTCGCGAAAATGAAAAAGACTTAATTGTTCTTACCCAATGTCCCACAAACTGGAATGATTTACGCATCTG GTTCCGACGAGCAATAAATCAACAAAAAAAACTAGCGATCGCTTACTCCCAACCTTTTATTACCCACCCTCTACAAATCT GGCAACAACTTCTGGGAATTGCCAAATATCTTAGCCGTACAGGTCAACCTGTAACTCCTGATCAATTGGTAAAAAAGTTA AGTATTAGTGATACTACTCTTAAATTAGGTTTAATAGCATTACAATATTTTGGATTTAATGTCAAGTATAAAGATAAATA TTTTTACATTATTCAGAGTCAAAGCCAAAATCAAAAATTAGAAACTTTATCCCAAACAGTCCAAAAGTTCCTCGCAGCAG TATCAGAAGAACAATTTAGGGAAAAATACTTTTGTGAAGTGCCCCTAAAAATAATAGAAGCGATCGCAATTCAAACAATT TTAGAAGATGCTAATAGTTCTATTCCCTTCTAG
Upstream 100 bases:
>100_bases TAATTTTACTTTCAACTTACTTTCGGACTAATTCTATATTTATATGGTTAACTATAATGTTTATATTCTATTCATTAGTA CAATAAATTGCTAAATAAAG
Downstream 100 bases:
>100_bases TTGCTCTACAATAATTAAAGTTGTGACACAAAATCGCTACTAATTATGCTCATTTGTCCCCAATGTGAGTTGGAAAATCC TGATAATCATAGATATTGTC
Product: exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 810; Mature: 809
Protein sequence:
>810_residues MSQEKKYWQILSSNHPPYSFIESFKSYVPELSGKYLAQLLWQRGIKNPEDIASFLDPKQYKPASFSAFGSEINNAVARII SARNNQEKVAIWGDFDADGITSTSVLWDGLGEFLDKIDQLTYYIPNRFTESHGLNFSGIERLAKKNYSLIITCDTGSTNI AEIEYANSLGIDIIVTDHHTIPTKRPPLFAIINPRYFSQDHPLYNLSGVGVAYKLIEALYLTHPEIPQLPLTELLDLVAI GLIADLVELRDDCRYLAQIGIEKLRTQLHKTTRPGVAKLLELCQKTGDRPTDISFGIGPRINAVSRIMGEASFCVELLTS RNPQHCQKLALQTELANSRRKSLEKEVAKDIAQKLTKLDLSTTHVIVLSDPQWPVGVLGLVAGQIAQKYGRPTILFSEET EVTKTSEKKLLARGSARSVGNINLYELVKNQAHLLHNFGGHPFAAGLSLPVENISIFTDAINQLLGEILGVTFNQTSVIE VDLIITVSELGRDLFQELKLLEPCGMGNPVPKLLIQNCWFTDIWHQNQTDMEGNKVRYIKTNFEICDKSIDKGFPGIWWG HYKEEIPEEICDAVLELDFNAKKKCYEARLIAVQPNSQDSQVVASNTVNWILDWRNNSQPLFENKNSKFLNKNYSDTNES KLSLRENEKDLIVLTQCPTNWNDLRIWFRRAINQQKKLAIAYSQPFITHPLQIWQQLLGIAKYLSRTGQPVTPDQLVKKL SISDTTLKLGLIALQYFGFNVKYKDKYFYIIQSQSQNQKLETLSQTVQKFLAAVSEEQFREKYFCEVPLKIIEAIAIQTI LEDANSSIPF
Sequences:
>Translated_810_residues MSQEKKYWQILSSNHPPYSFIESFKSYVPELSGKYLAQLLWQRGIKNPEDIASFLDPKQYKPASFSAFGSEINNAVARII SARNNQEKVAIWGDFDADGITSTSVLWDGLGEFLDKIDQLTYYIPNRFTESHGLNFSGIERLAKKNYSLIITCDTGSTNI AEIEYANSLGIDIIVTDHHTIPTKRPPLFAIINPRYFSQDHPLYNLSGVGVAYKLIEALYLTHPEIPQLPLTELLDLVAI GLIADLVELRDDCRYLAQIGIEKLRTQLHKTTRPGVAKLLELCQKTGDRPTDISFGIGPRINAVSRIMGEASFCVELLTS RNPQHCQKLALQTELANSRRKSLEKEVAKDIAQKLTKLDLSTTHVIVLSDPQWPVGVLGLVAGQIAQKYGRPTILFSEET EVTKTSEKKLLARGSARSVGNINLYELVKNQAHLLHNFGGHPFAAGLSLPVENISIFTDAINQLLGEILGVTFNQTSVIE VDLIITVSELGRDLFQELKLLEPCGMGNPVPKLLIQNCWFTDIWHQNQTDMEGNKVRYIKTNFEICDKSIDKGFPGIWWG HYKEEIPEEICDAVLELDFNAKKKCYEARLIAVQPNSQDSQVVASNTVNWILDWRNNSQPLFENKNSKFLNKNYSDTNES KLSLRENEKDLIVLTQCPTNWNDLRIWFRRAINQQKKLAIAYSQPFITHPLQIWQQLLGIAKYLSRTGQPVTPDQLVKKL SISDTTLKLGLIALQYFGFNVKYKDKYFYIIQSQSQNQKLETLSQTVQKFLAAVSEEQFREKYFCEVPLKIIEAIAIQTI LEDANSSIPF >Mature_809_residues SQEKKYWQILSSNHPPYSFIESFKSYVPELSGKYLAQLLWQRGIKNPEDIASFLDPKQYKPASFSAFGSEINNAVARIIS ARNNQEKVAIWGDFDADGITSTSVLWDGLGEFLDKIDQLTYYIPNRFTESHGLNFSGIERLAKKNYSLIITCDTGSTNIA EIEYANSLGIDIIVTDHHTIPTKRPPLFAIINPRYFSQDHPLYNLSGVGVAYKLIEALYLTHPEIPQLPLTELLDLVAIG LIADLVELRDDCRYLAQIGIEKLRTQLHKTTRPGVAKLLELCQKTGDRPTDISFGIGPRINAVSRIMGEASFCVELLTSR NPQHCQKLALQTELANSRRKSLEKEVAKDIAQKLTKLDLSTTHVIVLSDPQWPVGVLGLVAGQIAQKYGRPTILFSEETE VTKTSEKKLLARGSARSVGNINLYELVKNQAHLLHNFGGHPFAAGLSLPVENISIFTDAINQLLGEILGVTFNQTSVIEV DLIITVSELGRDLFQELKLLEPCGMGNPVPKLLIQNCWFTDIWHQNQTDMEGNKVRYIKTNFEICDKSIDKGFPGIWWGH YKEEIPEEICDAVLELDFNAKKKCYEARLIAVQPNSQDSQVVASNTVNWILDWRNNSQPLFENKNSKFLNKNYSDTNESK LSLRENEKDLIVLTQCPTNWNDLRIWFRRAINQQKKLAIAYSQPFITHPLQIWQQLLGIAKYLSRTGQPVTPDQLVKKLS ISDTTLKLGLIALQYFGFNVKYKDKYFYIIQSQSQNQKLETLSQTVQKFLAAVSEEQFREKYFCEVPLKIIEAIAIQTIL EDANSSIPF
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=459, Percent_Identity=30.718954248366, Blast_Score=200, Evalue=3e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 91768; Mature: 91637
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQEKKYWQILSSNHPPYSFIESFKSYVPELSGKYLAQLLWQRGIKNPEDIASFLDPKQY CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCC KPASFSAFGSEINNAVARIISARNNQEKVAIWGDFDADGITSTSVLWDGLGEFLDKIDQL CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH TYYIPNRFTESHGLNFSGIERLAKKNYSLIITCDTGSTNIAEIEYANSLGIDIIVTDHHT HHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC IPTKRPPLFAIINPRYFSQDHPLYNLSGVGVAYKLIEALYLTHPEIPQLPLTELLDLVAI CCCCCCCEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH GLIADLVELRDDCRYLAQIGIEKLRTQLHKTTRPGVAKLLELCQKTGDRPTDISFGIGPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC INAVSRIMGEASFCVELLTSRNPQHCQKLALQTELANSRRKSLEKEVAKDIAQKLTKLDL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC STTHVIVLSDPQWPVGVLGLVAGQIAQKYGRPTILFSEETEVTKTSEKKLLARGSARSVG CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCC NINLYELVKNQAHLLHNFGGHPFAAGLSLPVENISIFTDAINQLLGEILGVTFNQTSVIE CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE VDLIITVSELGRDLFQELKLLEPCGMGNPVPKLLIQNCWFTDIWHQNQTDMEGNKVRYIK EEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEE TNFEICDKSIDKGFPGIWWGHYKEEIPEEICDAVLELDFNAKKKCYEARLIAVQPNSQDS CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCCC QVVASNTVNWILDWRNNSQPLFENKNSKFLNKNYSDTNESKLSLRENEKDLIVLTQCPTN CEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC WNDLRIWFRRAINQQKKLAIAYSQPFITHPLQIWQQLLGIAKYLSRTGQPVTPDQLVKKL HHHHHHHHHHHHCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH SISDTTLKLGLIALQYFGFNVKYKDKYFYIIQSQSQNQKLETLSQTVQKFLAAVSEEQFR CCCCHHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH EKYFCEVPLKIIEAIAIQTILEDANSSIPF HHHHHHCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SQEKKYWQILSSNHPPYSFIESFKSYVPELSGKYLAQLLWQRGIKNPEDIASFLDPKQY CCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCC KPASFSAFGSEINNAVARIISARNNQEKVAIWGDFDADGITSTSVLWDGLGEFLDKIDQL CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH TYYIPNRFTESHGLNFSGIERLAKKNYSLIITCDTGSTNIAEIEYANSLGIDIIVTDHHT HHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC IPTKRPPLFAIINPRYFSQDHPLYNLSGVGVAYKLIEALYLTHPEIPQLPLTELLDLVAI CCCCCCCEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH GLIADLVELRDDCRYLAQIGIEKLRTQLHKTTRPGVAKLLELCQKTGDRPTDISFGIGPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC INAVSRIMGEASFCVELLTSRNPQHCQKLALQTELANSRRKSLEKEVAKDIAQKLTKLDL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC STTHVIVLSDPQWPVGVLGLVAGQIAQKYGRPTILFSEETEVTKTSEKKLLARGSARSVG CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCC NINLYELVKNQAHLLHNFGGHPFAAGLSLPVENISIFTDAINQLLGEILGVTFNQTSVIE CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE VDLIITVSELGRDLFQELKLLEPCGMGNPVPKLLIQNCWFTDIWHQNQTDMEGNKVRYIK EEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEE TNFEICDKSIDKGFPGIWWGHYKEEIPEEICDAVLELDFNAKKKCYEARLIAVQPNSQDS CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCCC QVVASNTVNWILDWRNNSQPLFENKNSKFLNKNYSDTNESKLSLRENEKDLIVLTQCPTN CEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC WNDLRIWFRRAINQQKKLAIAYSQPFITHPLQIWQQLLGIAKYLSRTGQPVTPDQLVKKL HHHHHHHHHHHHCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH SISDTTLKLGLIALQYFGFNVKYKDKYFYIIQSQSQNQKLETLSQTVQKFLAAVSEEQFR CCCCHHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH EKYFCEVPLKIIEAIAIQTILEDANSSIPF HHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]