Click here to switch to the map view.

The map label for this gene is rnhB

Identifier: 113474350

GI number: 113474350

Start: 771178

End: 771813

Strand: Reverse

Name: rnhB

Synonym: Tery_0482

Alternate gene names: 113474350

Gene position: 771813-771178 (Counterclockwise)

Preceding gene: 113474351

Following gene: 113474349

Centisome position: 9.96

GC content: 40.25

Gene sequence:

>636_bases
GTGGAAATCGAGAATTCTTCTGACTTAATTATTGATGGTTTATACTCATTTCTAAGTGCTGGTGTGGATGAAGTGGGGCG
TGGAGCCTTATTTGGACCTGTCGTGGCAGCAGCGGTAATTTTGCCAGAAGATGTTTTGGATGATTTGGCTAGTACTGGAG
TGACAGATAGTAAAAAGCTGACGGAAAAACGTCGTTGTCATTTGGCTTCTCTGATTCGGACAGTGGCTTGGGATTGTCAA
ATTGGTATTGCTTCTGTACGGGAAATTGACCGTTTGAATATTCTCAAGGCTTCTTTGTTGGCAATGAAGCGGGCTGTTTT
GAGGCTAAAATTGAGACCAGATTTGGTTTTGGTTGATGGAAATCAAGAGATTAGAGATTTATTTATACCTCAAAGGACTG
TTGTGAAGGGGGATAGTAAGTGTTTGGCGATCGCTGCTGCAAGTATTGTGGCTAAGGTTTGGCGTGATACTTTGATTATG
CGCTTAGCAAAAAAATATCCTGTTTATGACTTGACGAAAAATAAAGGTTATGGTACAAAAAAGCATAAACAAGGAATAAT
AAATTACGGGGTGTCACCTCAACATCGTCTTTCGTTTAGTCCTTGTCAACCTTCTCTGTTTGAAGTCAGAAGTTAA

Upstream 100 bases:

>100_bases
AACCTATTAACAGCAAGTCTGTTAAGGGTTATATGAAATAGGTAAGTGAACAACCTATTTAATTATTTTGATTTGAGTAA
GTTTGAGGAGGTTTCATTAG

Downstream 100 bases:

>100_bases
TGTCCCCTTAACCCCTACTAAGGGGGTATAACTGTTTCTTGGTTACAAAAAATAGAGAGGAAGATATAAATATAAGTATA
ACTGGGGAATTTTTGCCAAA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MEIENSSDLIIDGLYSFLSAGVDEVGRGALFGPVVAAAVILPEDVLDDLASTGVTDSKKLTEKRRCHLASLIRTVAWDCQ
IGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDGNQEIRDLFIPQRTVVKGDSKCLAIAAASIVAKVWRDTLIM
RLAKKYPVYDLTKNKGYGTKKHKQGIINYGVSPQHRLSFSPCQPSLFEVRS

Sequences:

>Translated_211_residues
MEIENSSDLIIDGLYSFLSAGVDEVGRGALFGPVVAAAVILPEDVLDDLASTGVTDSKKLTEKRRCHLASLIRTVAWDCQ
IGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDGNQEIRDLFIPQRTVVKGDSKCLAIAAASIVAKVWRDTLIM
RLAKKYPVYDLTKNKGYGTKKHKQGIINYGVSPQHRLSFSPCQPSLFEVRS
>Mature_211_residues
MEIENSSDLIIDGLYSFLSAGVDEVGRGALFGPVVAAAVILPEDVLDDLASTGVTDSKKLTEKRRCHLASLIRTVAWDCQ
IGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDGNQEIRDLFIPQRTVVKGDSKCLAIAAASIVAKVWRDTLIM
RLAKKYPVYDLTKNKGYGTKKHKQGIINYGVSPQHRLSFSPCQPSLFEVRS

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family

Homologues:

Organism=Escherichia coli, GI1786380, Length=192, Percent_Identity=46.875, Blast_Score=149, Evalue=9e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH2_TRIEI (Q118Y6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720411.1
- ProteinModelPortal:   Q118Y6
- SMR:   Q118Y6
- STRING:   Q118Y6
- GeneID:   4241694
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0482
- NMPDR:   fig|203124.1.peg.4534
- eggNOG:   COG0164
- HOGENOM:   HBG584843
- OMA:   RLGPTPI
- PhylomeDB:   Q118Y6
- ProtClustDB:   PRK13925
- BioCyc:   TERY203124:TERY_0482-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00052_B
- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337
- PANTHER:   PTHR10954

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 23289; Mature: 23289

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIENSSDLIIDGLYSFLSAGVDEVGRGALFGPVVAAAVILPEDVLDDLASTGVTDSKKL
CCCCCCCCHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH
TEKRRCHLASLIRTVAWDCQIGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
NQEIRDLFIPQRTVVKGDSKCLAIAAASIVAKVWRDTLIMRLAKKYPVYDLTKNKGYGTK
CHHHHHHHCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCH
KHKQGIINYGVSPQHRLSFSPCQPSLFEVRS
HHHCCHHCCCCCCCCCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MEIENSSDLIIDGLYSFLSAGVDEVGRGALFGPVVAAAVILPEDVLDDLASTGVTDSKKL
CCCCCCCCHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH
TEKRRCHLASLIRTVAWDCQIGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
NQEIRDLFIPQRTVVKGDSKCLAIAAASIVAKVWRDTLIMRLAKKYPVYDLTKNKGYGTK
CHHHHHHHCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCH
KHKQGIINYGVSPQHRLSFSPCQPSLFEVRS
HHHCCHHCCCCCCCCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA