Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474262

Identifier: 113474262

GI number: 113474262

Start: 592556

End: 594907

Strand: Reverse

Name: 113474262

Synonym: Tery_0382

Alternate gene names: NA

Gene position: 594907-592556 (Counterclockwise)

Preceding gene: 113474263

Following gene: 113474261

Centisome position: 7.68

GC content: 34.18

Gene sequence:

>2352_bases
ATGCTAAAAAAAAGGGGGGTATTTGAAGTTATCAAGAATGAAAATCTTGATAAAAAAATACAGGGAATATGTCATCAACA
AGTTATGGAACGAAGACGTGCTTTATTAATTGGAATAACAATATTTGGTGAAGGATTAGATAACTTCTCCCCAACACTAG
AAGACGTTCAAGTTATGAAAAAATGCTTGGAAGAAAAGGGTGGGTTTGAAGTTATCCAGGAGGAAAATCTTGATAGAAAA
GACATGGAATATGCCATCAACAAGTTTTTTTACGAGTCTCAAAAATCAGATACTTTACTTATTTATGTTTCAAGTCACGG
TATTACAGATGCAGAAGGAACTTTTTATATCGCAACTTCTGAGACAAGTTATGATAGGGATACAGAAATAATTACAGGAG
CTATTGAAGCAAGTTATTTCCACCGACAAATAAAAAATTGTACTTCTAATTCTCAAGTATGGCTGTTAGATTTATGTTAT
TCAGGCGCTTTTGTTCGAGGATACAGTAAAGGTAAAAATGATTCAGCAGAGAATTTACTAATTCAACAGTTGTTAAATCA
AAAACAAAGATATCAAGCCATATCTAAGGGAATAAGTTCGGATAATTCAGTTGAAATTAAACAAAAAGAAGGATTAGTAA
TTATTACTTCTTCAGCAGGGGATCAAAAATCATATTTTATGGAAAATCAGTCTGATCTTTCTATCTTTACTTACTATGCT
CAATTAGCTTTAAATGGTGATGCTGCTAACGAAGAAGGAAAAGTAACAGTTGACTCTTTTTATAAGTTTTTGGAAGTTAA
TATACCGAAATATGTTAAAGAGAATATCCCCAAATTCAAATATGGCGGTGGTATGAAACCAGAAATCCACATTTTACATG
GAGAAGCTTATGATATTGTTTTAGCAAAAACTCAACTAGAGCCAAAGTTACAGTTTAGGAGAAATGAATCTAAAGAGAAT
TTATTTAAGTGTAAATATCAAATAGAAAAACCAAAAAATAAATTAGGAATTGCCCAAGAAGAGCCTGAAATAATCTTTAA
AGAATTACCAAACATTAACCTGAAAAGAGAGATAAATCAAGGCAAATATCAACAAAATTTTTTTAAAATATTAAAATCAT
ATACTATTCTGTCTATTGTACTGCTAATAAGCATATTCATAACTACTTTAGTAACAAAGCCTCCAGAGAGAGTACAACAA
TTCAAACTACAGGCTTTCGATCAGATGATAAGATGGAGGAGAGATGAAGGTCCAGATAAACGCTTGCTAATTGTTACAGT
TACTCCAGAAGATATTAAATATCAAAAGGAAATGGGGTGGGAAATAGGAGGAGAATCACTATCAGACCAAGCAATTATTA
AAGTTTTAGACAAATTAAATACCTATAAACCTCTAGTTATCGGTCTAGATATCTTTCGAGATTTTCCTGCTAAAGATGAA
CATTTAAAAACTCAGCTCGCCCAGAATAAAAGCTTGATCGCTGTATGTAAAATTAAGGAAGAAAAAAATAATAGTATTGG
CATAGAACCTCCTCCTGAAATTCAAGAAAAACAACGAATAGGTTTTGCTGATTTTCCTCAAGACTCTGGTGGCGTTATTC
GACGTCAGTTGTTGGGGATGTCAATTCCTGAAAACTCCCTTTGTTCAAGTTATTCTTTTAGTCTGAGGATAGCAATTCGT
TATCTAAAAGAAAAAGGCATGGAAAAGAGAGCAGGAGAATTTAATCAAGGTAACTTAAAAATTAATGAGGTCCTTTTCCA
TAAATTAGAGAAGGATGCTGGGGGATATCATTTGCCTAAAAGGGAAGCACTAGGTTATCAAATTCTTCTCAATTACCGTT
CTTCTGAGAAAATTGCGGAAACGATGACTCTTAAGGAATTACTTGATGGATCCCGTGACTCTAAACTCGCCCATCTGGTC
AAGAACAAAATTGTTCTCATTGGGACTGATGCTGCTGAGGTTGGTTATGAAGATATGCATTTGACTCCCTATAATAAGAA
GATACCAGGAATAATGATTCATGGTCACATGATCAGTCAGATTCTCAGTGCTGTCTTAGATGGGCGAACACTTTTGTGGT
GGTGGCCGCAGGCCTTAGAAAATATTTGGGTTTGGGGTTGGTCTTTTATAGGAGGAATACTGGGTATTTGTTGGAGCAGG
CAAGTTTTTGGAAGGTGGTTCATTGGGATAACTGTAGTAGCAGTACCTGTTACGTTATGGGGAATCTGCTTTTTAGTTTT
TATAGAAATTGGCGGATGGCTGCCACTGGTTCCCTCGATACTAGGTTTCTTTTTAACTGGGATAGCGATAATTTTCTCTA
ATAAAACAATTAATGACACCATGTTTCTGTAA

Upstream 100 bases:

>100_bases
TATGGAAGGAAGACGTGCTTTATTAATTTGAATAATAACATTTTGTGAAGAATTAGATAACTTCCCCCCCCACACTGGAA
GAAATTTAAGTTATCAATAA

Downstream 100 bases:

>100_bases
AATGATATACATGGTAAATAATGAAAATCTTGTAGTGCAACTATATTGCTCCCGTTGGTGTATATAATAACAACGGGAAT
TGCTGTAAGTTACATAAATA

Product: putative Chase2 sensor protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 783; Mature: 783

Protein sequence:

>783_residues
MLKKRGVFEVIKNENLDKKIQGICHQQVMERRRALLIGITIFGEGLDNFSPTLEDVQVMKKCLEEKGGFEVIQEENLDRK
DMEYAINKFFYESQKSDTLLIYVSSHGITDAEGTFYIATSETSYDRDTEIITGAIEASYFHRQIKNCTSNSQVWLLDLCY
SGAFVRGYSKGKNDSAENLLIQQLLNQKQRYQAISKGISSDNSVEIKQKEGLVIITSSAGDQKSYFMENQSDLSIFTYYA
QLALNGDAANEEGKVTVDSFYKFLEVNIPKYVKENIPKFKYGGGMKPEIHILHGEAYDIVLAKTQLEPKLQFRRNESKEN
LFKCKYQIEKPKNKLGIAQEEPEIIFKELPNINLKREINQGKYQQNFFKILKSYTILSIVLLISIFITTLVTKPPERVQQ
FKLQAFDQMIRWRRDEGPDKRLLIVTVTPEDIKYQKEMGWEIGGESLSDQAIIKVLDKLNTYKPLVIGLDIFRDFPAKDE
HLKTQLAQNKSLIAVCKIKEEKNNSIGIEPPPEIQEKQRIGFADFPQDSGGVIRRQLLGMSIPENSLCSSYSFSLRIAIR
YLKEKGMEKRAGEFNQGNLKINEVLFHKLEKDAGGYHLPKREALGYQILLNYRSSEKIAETMTLKELLDGSRDSKLAHLV
KNKIVLIGTDAAEVGYEDMHLTPYNKKIPGIMIHGHMISQILSAVLDGRTLLWWWPQALENIWVWGWSFIGGILGICWSR
QVFGRWFIGITVVAVPVTLWGICFLVFIEIGGWLPLVPSILGFFLTGIAIIFSNKTINDTMFL

Sequences:

>Translated_783_residues
MLKKRGVFEVIKNENLDKKIQGICHQQVMERRRALLIGITIFGEGLDNFSPTLEDVQVMKKCLEEKGGFEVIQEENLDRK
DMEYAINKFFYESQKSDTLLIYVSSHGITDAEGTFYIATSETSYDRDTEIITGAIEASYFHRQIKNCTSNSQVWLLDLCY
SGAFVRGYSKGKNDSAENLLIQQLLNQKQRYQAISKGISSDNSVEIKQKEGLVIITSSAGDQKSYFMENQSDLSIFTYYA
QLALNGDAANEEGKVTVDSFYKFLEVNIPKYVKENIPKFKYGGGMKPEIHILHGEAYDIVLAKTQLEPKLQFRRNESKEN
LFKCKYQIEKPKNKLGIAQEEPEIIFKELPNINLKREINQGKYQQNFFKILKSYTILSIVLLISIFITTLVTKPPERVQQ
FKLQAFDQMIRWRRDEGPDKRLLIVTVTPEDIKYQKEMGWEIGGESLSDQAIIKVLDKLNTYKPLVIGLDIFRDFPAKDE
HLKTQLAQNKSLIAVCKIKEEKNNSIGIEPPPEIQEKQRIGFADFPQDSGGVIRRQLLGMSIPENSLCSSYSFSLRIAIR
YLKEKGMEKRAGEFNQGNLKINEVLFHKLEKDAGGYHLPKREALGYQILLNYRSSEKIAETMTLKELLDGSRDSKLAHLV
KNKIVLIGTDAAEVGYEDMHLTPYNKKIPGIMIHGHMISQILSAVLDGRTLLWWWPQALENIWVWGWSFIGGILGICWSR
QVFGRWFIGITVVAVPVTLWGICFLVFIEIGGWLPLVPSILGFFLTGIAIIFSNKTINDTMFL
>Mature_783_residues
MLKKRGVFEVIKNENLDKKIQGICHQQVMERRRALLIGITIFGEGLDNFSPTLEDVQVMKKCLEEKGGFEVIQEENLDRK
DMEYAINKFFYESQKSDTLLIYVSSHGITDAEGTFYIATSETSYDRDTEIITGAIEASYFHRQIKNCTSNSQVWLLDLCY
SGAFVRGYSKGKNDSAENLLIQQLLNQKQRYQAISKGISSDNSVEIKQKEGLVIITSSAGDQKSYFMENQSDLSIFTYYA
QLALNGDAANEEGKVTVDSFYKFLEVNIPKYVKENIPKFKYGGGMKPEIHILHGEAYDIVLAKTQLEPKLQFRRNESKEN
LFKCKYQIEKPKNKLGIAQEEPEIIFKELPNINLKREINQGKYQQNFFKILKSYTILSIVLLISIFITTLVTKPPERVQQ
FKLQAFDQMIRWRRDEGPDKRLLIVTVTPEDIKYQKEMGWEIGGESLSDQAIIKVLDKLNTYKPLVIGLDIFRDFPAKDE
HLKTQLAQNKSLIAVCKIKEEKNNSIGIEPPPEIQEKQRIGFADFPQDSGGVIRRQLLGMSIPENSLCSSYSFSLRIAIR
YLKEKGMEKRAGEFNQGNLKINEVLFHKLEKDAGGYHLPKREALGYQILLNYRSSEKIAETMTLKELLDGSRDSKLAHLV
KNKIVLIGTDAAEVGYEDMHLTPYNKKIPGIMIHGHMISQILSAVLDGRTLLWWWPQALENIWVWGWSFIGGILGICWSR
QVFGRWFIGITVVAVPVTLWGICFLVFIEIGGWLPLVPSILGFFLTGIAIIFSNKTINDTMFL

Specific function: Unknown

COG id: COG4252

COG function: function code T; Predicted transmembrane sensor domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 89492; Mature: 89492

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKRGVFEVIKNENLDKKIQGICHQQVMERRRALLIGITIFGEGLDNFSPTLEDVQVMK
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCHHHHHHHH
KCLEEKGGFEVIQEENLDRKDMEYAINKFFYESQKSDTLLIYVSSHGITDAEGTFYIATS
HHHHHCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEC
ETSYDRDTEIITGAIEASYFHRQIKNCTSNSQVWLLDLCYSGAFVRGYSKGKNDSAENLL
CCCCCCCCHHEEHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCEEECCCCCCCCCHHHHH
IQQLLNQKQRYQAISKGISSDNSVEIKQKEGLVIITSSAGDQKSYFMENQSDLSIFTYYA
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCHHHHCCCCCCCHHHEEEE
QLALNGDAANEEGKVTVDSFYKFLEVNIPKYVKENIPKFKYGGGMKPEIHILHGEAYDIV
HHEECCCCCCCCCCEEHHHHHHHHHCCCCHHHHHCCCCEECCCCCCCEEEEEECCEEEEE
LAKTQLEPKLQFRRNESKENLFKCKYQIEKPKNKLGIAQEEPEIIFKELPNINLKREINQ
EEECCCCCHHHHHCCCCHHHHEEEEEEECCCHHHCCCCCCCCHHHHHHCCCCCEEECCCC
GKYQQNFFKILKSYTILSIVLLISIFITTLVTKPPERVQQFKLQAFDQMIRWRRDEGPDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
RLLIVTVTPEDIKYQKEMGWEIGGESLSDQAIIKVLDKLNTYKPLVIGLDIFRDFPAKDE
EEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCHH
HLKTQLAQNKSLIAVCKIKEEKNNSIGIEPPPEIQEKQRIGFADFPQDSGGVIRRQLLGM
HHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCC
SIPENSLCSSYSFSLRIAIRYLKEKGMEKRAGEFNQGNLKINEVLFHKLEKDAGGYHLPK
CCCCCHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCEEHHHHHHHHHHHCCCCCCCCH
REALGYQILLNYRSSEKIAETMTLKELLDGSRDSKLAHLVKNKIVLIGTDAAEVGYEDMH
HHHCCEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEECCHHHCCCCCCE
LTPYNKKIPGIMIHGHMISQILSAVLDGRTLLWWWPQALENIWVWGWSFIGGILGICWSR
ECCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECHHHHHHHEEHHHHHHHHHHHHHHHH
QVFGRWFIGITVVAVPVTLWGICFLVFIEIGGWLPLVPSILGFFLTGIAIIFSNKTINDT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
MFL
CCC
>Mature Secondary Structure
MLKKRGVFEVIKNENLDKKIQGICHQQVMERRRALLIGITIFGEGLDNFSPTLEDVQVMK
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCHHHHHHHH
KCLEEKGGFEVIQEENLDRKDMEYAINKFFYESQKSDTLLIYVSSHGITDAEGTFYIATS
HHHHHCCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEC
ETSYDRDTEIITGAIEASYFHRQIKNCTSNSQVWLLDLCYSGAFVRGYSKGKNDSAENLL
CCCCCCCCHHEEHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCEEECCCCCCCCCHHHHH
IQQLLNQKQRYQAISKGISSDNSVEIKQKEGLVIITSSAGDQKSYFMENQSDLSIFTYYA
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCHHHHCCCCCCCHHHEEEE
QLALNGDAANEEGKVTVDSFYKFLEVNIPKYVKENIPKFKYGGGMKPEIHILHGEAYDIV
HHEECCCCCCCCCCEEHHHHHHHHHCCCCHHHHHCCCCEECCCCCCCEEEEEECCEEEEE
LAKTQLEPKLQFRRNESKENLFKCKYQIEKPKNKLGIAQEEPEIIFKELPNINLKREINQ
EEECCCCCHHHHHCCCCHHHHEEEEEEECCCHHHCCCCCCCCHHHHHHCCCCCEEECCCC
GKYQQNFFKILKSYTILSIVLLISIFITTLVTKPPERVQQFKLQAFDQMIRWRRDEGPDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
RLLIVTVTPEDIKYQKEMGWEIGGESLSDQAIIKVLDKLNTYKPLVIGLDIFRDFPAKDE
EEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCHH
HLKTQLAQNKSLIAVCKIKEEKNNSIGIEPPPEIQEKQRIGFADFPQDSGGVIRRQLLGM
HHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCC
SIPENSLCSSYSFSLRIAIRYLKEKGMEKRAGEFNQGNLKINEVLFHKLEKDAGGYHLPK
CCCCCHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCEEHHHHHHHHHHHCCCCCCCCH
REALGYQILLNYRSSEKIAETMTLKELLDGSRDSKLAHLVKNKIVLIGTDAAEVGYEDMH
HHHCCEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEECCHHHCCCCCCE
LTPYNKKIPGIMIHGHMISQILSAVLDGRTLLWWWPQALENIWVWGWSFIGGILGICWSR
ECCCCCCCCCEEEEHHHHHHHHHHHHCCCEEEEECHHHHHHHEEHHHHHHHHHHHHHHHH
QVFGRWFIGITVVAVPVTLWGICFLVFIEIGGWLPLVPSILGFFLTGIAIIFSNKTINDT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
MFL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA